Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0867
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 71 8e-13
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 64 7e-11
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 57 1e-08
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 46 2e-05
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 45 5e-05
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 45 5e-05
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 45 5e-05
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 42 3e-04
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 42 4e-04
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 40 0.001
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 37 0.012
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 37 0.012
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 37 0.016
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 37 0.016
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 37 0.016
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 36 0.038
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 35 0.066
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 33 0.15
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 33 0.27
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 33 0.27
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 32 0.35
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 32 0.47
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 32 0.47
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 32 0.47
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 29 0.61
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 30 1.4
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ... 30 1.9
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 30 1.9
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 30 1.9
AL132860-4|CAB60496.1| 762|Caenorhabditis elegans Hypothetical ... 29 3.3
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 29 4.3
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 29 4.3
U50310-1|AAA92538.1| 317|Caenorhabditis elegans Hypothetical pr... 29 4.3
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 29 4.3
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 29 4.3
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 29 4.3
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 28 5.7
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 28 5.7
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 28 5.7
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 28 5.7
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 28 5.7
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 28 5.7
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 7.6
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 7.6
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 70.9 bits (166), Expect = 8e-13
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Frame = +2
Query: 254 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA P + + +
Sbjct: 86 NLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHE-L 144
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPL--CT*TTNRLFGEVMV 607
+++PT IQ+ WPIAMSG+++++ K K L T +R GE
Sbjct: 145 LYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPA 204
Query: 608 RLLWSLAPTRELAQ 649
L+ L PTRELAQ
Sbjct: 205 VLV--LLPTRELAQ 216
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALV 621
++ I + KTGSGKTLA++LPA+VHI Q +RG+GP LV
Sbjct: 167 RDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLV 207
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 64.5 bits (150), Expect = 7e-11
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
Q FNKNFY+ H + + +V +N + V G++ P+ F +F + + ++
Sbjct: 223 QKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRK 282
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLAYPK----RVPAKRWPTSCQPLCT*TTNRLFGEVMV 607
Y++PTPIQA P A+SG+++L K + A WP + + GE V
Sbjct: 283 SEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMD--QPDLKAGEGPV 340
Query: 608 RLLWSLAPTRELA 646
++ + PTRELA
Sbjct: 341 AVI--VVPTRELA 351
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/55 (41%), Positives = 39/55 (70%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVSTTXFRK 663
++ +G+ KTGSGKT AY+ PAIVHI QP ++ G+GP+A++ + ++ F++
Sbjct: 303 RDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQE 357
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 63.3 bits (147), Expect = 2e-10
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Frame = +2
Query: 332 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + ++++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 512 AYPKR---------VPAKRWPTSCQPLCT*TTNRLFGEVMVRLLWSLAPTRELAQPXSAS 664
+ +P W TS P +R G + +APTRELAQ
Sbjct: 343 GVAETGSGKTAAFLLPLLVWITSL-PKMERQEHRDLGPYAI----IMAPTRELAQQIEEE 397
Query: 665 CCRF 676
+F
Sbjct: 398 TNKF 401
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVSTTXFRK 663
++ IG+ KTGSGKTLA++LP HI QP + GDGPIA++ + ++ +++
Sbjct: 342 RDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKE 396
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +2
Query: 266 FNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 442
F KNFY + + + EV+ YR + +TV G++ PI+ + + + +K
Sbjct: 263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKF 322
Query: 443 GYKEPTPIQAQGWPIAMSGKNLLAYPK 523
Y +PT IQAQ P MSG++++ K
Sbjct: 323 EYSKPTSIQAQAIPSIMSGRDVIGIAK 349
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V +G +V PI F + + +++++ +KT GY PTP+Q P G++L++
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMS 208
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +2
Query: 341 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L++
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMS 181
Score = 31.1 bits (67), Expect = 0.81
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI 573
++ + +TGSGKT A++LP I HI
Sbjct: 177 RDLMSCAQTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +2
Query: 341 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L++
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMS 165
Score = 31.1 bits (67), Expect = 0.81
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI 573
++ + +TGSGKT A++LP I HI
Sbjct: 161 RDLMSCAQTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +2
Query: 341 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L++
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMS 162
Score = 31.1 bits (67), Expect = 0.81
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI 573
++ + +TGSGKT A++LP I HI
Sbjct: 158 RDLMSCAQTGSGKTAAFLLPIIQHI 182
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVHINXQ 582
+ NG ++ S ++ IGV +TGSGKTLA++LPA++HI+ Q
Sbjct: 100 RKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ 149
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Frame = +2
Query: 248 FCSLQPFNKNFYDPHPTVLKRSPYEVEE-YRNNHEVTV------SGVEVHNPIQYFEEAN 406
F ++P ++ Y SP +++E Y N + V S V++ P+ FE+A
Sbjct: 30 FSWMKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAF 89
Query: 407 FPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ G ++ G+++P+PIQ+Q WP+ +SG++ +
Sbjct: 90 GSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCI 125
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQP---PIRRGDGPIALVFGAYQRVSTTXFRKLL 669
++ IG+ TGSGKT+ ++LP ++ Q P R +GP L+ + ++ F ++
Sbjct: 228 RDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLII 287
Query: 670 QILD 681
++ D
Sbjct: 288 EMFD 291
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 463
P + ++S + E R ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 464 IQAQGWPIAMSGKNLL 511
IQ QG P+A+SG++++
Sbjct: 216 IQIQGIPVALSGRDMI 231
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/85 (32%), Positives = 39/85 (45%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
FE+ N + + GY +PTPIQ P+A++GK++ A K P+
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKT-AAFVLPILE 208
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELA 646
R G R+L L PTRELA
Sbjct: 209 RMIYRPKGASCTRVL-VLVPTRELA 232
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F +++ P +++ V+ GY TPIQ P+ GK++LA
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRG 600
K+ + +TGSGKT A++LP + + + + G
Sbjct: 336 KDILACAQTGSGKTAAFLLPIMSRLILEKDLNYG 369
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F +++ P +++ V+ GY TPIQ P+ GK++LA
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRG 600
K+ + +TGSGKT A++LP + + + + G
Sbjct: 336 KDILACAQTGSGKTAAFLLPIMSRLILEKDLNYG 369
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F EAN + +Q+ V GY + TPIQ P+ G +++A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F EAN + +Q+ V GY + TPIQ P+ G +++A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F EAN + +Q+ V GY + TPIQ P+ G +++A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAI 564
KDN + +A S + +G KTGSGKTLA ++P +
Sbjct: 92 KDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 34.7 bits (76), Expect = 0.066
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 428 GVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT*TTNRLFG-EVM 604
G+ G+++P+PIQ +A++G+++LA K K C P+ L + M
Sbjct: 57 GIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTG-AYCIPVIEKIQPALKAIQAM 115
Query: 605 VRLLWSLAPTRELAQPXSASCCRFWTHI 688
V + PTRELA S C HI
Sbjct: 116 V-----IVPTRELALQTSQICVELSKHI 138
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAI 564
K+ + KTGSGKTLA++LPAI
Sbjct: 106 KDVLASAKTGSGKTLAFLLPAI 127
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 374 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTS 553
H +++ V + ++ G+ +PTPIQ + P M GK+++A R + +
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAM-SRTGSGKTAAF 78
Query: 554 CQPLCT*TTNRLFGEVMVRLLWSLAPTRELA 646
P+ R +R L ++PTRELA
Sbjct: 79 VIPMLQKLKRR--DTTGIRAL-MVSPTRELA 106
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 374 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTS 553
H +++ V + ++ G+ +PTPIQ + P M GK+++A R + +
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAM-SRTGSGKTAAF 78
Query: 554 CQPLCT*TTNRLFGEVMVRLLWSLAPTRELA 646
P+ R +R L ++PTRELA
Sbjct: 79 VIPMLQKLKRR--DTTGIRAL-MVSPTRELA 106
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGD-GPIALVFGAYQRVSTTXFRKLLQI 675
K +G +TGSGKT A+++P + + + G GP A++ + + T ++ +++
Sbjct: 127 KNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKL 186
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
F EAN + +++ V GY + TPIQ P+ G +++A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
F EAN + +++ V GY + TPIQ P+ G +++A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
F EAN + +++ V GY + TPIQ P+ G +++A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 28.7 bits (61), Expect(2) = 0.61
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI 573
++ +G +TGSGKTLA+ +P + +
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLVARL 218
Score = 21.4 bits (43), Expect(2) = 0.61
Identities = 8/28 (28%), Positives = 13/28 (46%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVP 519
D G + +S+ D WK+F +P
Sbjct: 136 DTGKPKKSKKEASKKTDISAWKQFYFLP 163
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 430 CKDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVHINXQP 585
C+ G + + L + K+ IG+ +TGSGKT A+ +P + + P
Sbjct: 59 CQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 110
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 505 FIGVPKTGSGKTLAYILPAIVH 570
++ +P TG+GK+L Y LPA+VH
Sbjct: 198 YVSLP-TGAGKSLCYQLPAVVH 218
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHINXQP 585
TGSGKT+ Y+LP + + +P
Sbjct: 165 TGSGKTICYVLPVLAAVGSKP 185
>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
protein Y47A7.1 protein.
Length = 1114
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 8 PASERIHSLNKHLQLNPKNNHVW 76
PAS ++H L++ LQLN N+ W
Sbjct: 773 PASHQLHCLSRALQLNKANDSAW 795
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 502 EFIGVPKTGSGKTLAYILPAIVHINXQP 585
+ +G +TG+GKTLA+ +P + ++ P
Sbjct: 128 DILGCARTGTGKTLAFAIPILQKLSVDP 155
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 502 EFIGVPKTGSGKTLAYILPAIVHINXQP 585
+ +G +TG+GKTLA+ +P + ++ P
Sbjct: 128 DILGCARTGTGKTLAFAIPILQKLSVDP 155
>AL132860-4|CAB60496.1| 762|Caenorhabditis elegans Hypothetical
protein Y56A3A.5 protein.
Length = 762
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 245 GFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNN 343
GFCS+ P N+ + LK YEV+E++ N
Sbjct: 478 GFCSVSPSNQRAVEETIGKLKELGYEVKEFKVN 510
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 149 RRIIAEFVASSKFGTTVSTAIIPV 78
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 149 RRIIAEFVASSKFGTTVSTAIIPV 78
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQP 562
++ F++ + + +G+ G+++P+ IQ + +GK+++A + K S
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 563 LCT*TTNRLFGEVMVRLLWSLAPTRELAQ 649
L R+ E +APTRELAQ
Sbjct: 88 L-----QRIDHEDPHVQALVMAPTRELAQ 111
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI 573
++ +G +TGSGKTLA+ +P + +
Sbjct: 27 QDVLGAAETGSGKTLAFGIPLVARL 51
>U50310-1|AAA92538.1| 317|Caenorhabditis elegans Hypothetical
protein ZC487.2 protein.
Length = 317
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 505 FIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGP-IALVFGAYQRVSTTXFRKLLQIL 678
F VPK G+G TLA I I+ + I G P I L+F + R++T K L L
Sbjct: 245 FYIVPKVGNGSTLAIIAMNIIGV-----IDMGLNPLILLIFNSKVRLATVVLFKFLPCL 298
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQP 562
++ F++ + + +G+ G+++P+ IQ + +GK+++A + K S
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 563 LCT*TTNRLFGEVMVRLLWSLAPTRELAQ 649
L R+ E +APTRELAQ
Sbjct: 88 L-----QRIDHEDPHVQALVMAPTRELAQ 111
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -2
Query: 505 ILSRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLF 326
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+++F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 325 D 323
+
Sbjct: 86 N 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -2
Query: 505 ILSRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLF 326
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+++F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 325 D 323
+
Sbjct: 86 N 86
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = -1
Query: 266 KVGANRIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAI 87
++G ++ H + + P + + KSI + E S G T ++
Sbjct: 639 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 698
Query: 86 IPVTRHDYFSDLVEDVYLNYGFFLTQ 9
P+TRH+ + + E +Y G+ L Q
Sbjct: 699 APLTRHEILAKMAE-MYKEGGYGLNQ 723
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = -1
Query: 266 KVGANRIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAI 87
++G ++ H + + P + + KSI + E S G T ++
Sbjct: 647 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 706
Query: 86 IPVTRHDYFSDLVEDVYLNYGFFLTQ 9
P+TRH+ + + E +Y G+ L Q
Sbjct: 707 APLTRHEILAKMAE-MYKEGGYGLNQ 731
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = -1
Query: 266 KVGANRIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAI 87
++G ++ H + + P + + KSI + E S G T ++
Sbjct: 647 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 706
Query: 86 IPVTRHDYFSDLVEDVYLNYGFFLTQ 9
P+TRH+ + + E +Y G+ L Q
Sbjct: 707 APLTRHEILAKMAE-MYKEGGYGLNQ 731
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = -1
Query: 266 KVGANRIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAI 87
++G ++ H + + P + + KSI + E S G T ++
Sbjct: 639 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 698
Query: 86 IPVTRHDYFSDLVEDVYLNYGFFLTQ 9
P+TRH+ + + E +Y G+ L Q
Sbjct: 699 APLTRHEILAKMAE-MYKEGGYGLNQ 723
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPK 523
FE + +K + P+P+QA+ P+ + G+++L K
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAK 67
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPK 523
FE + +K + P+P+QA+ P+ + G+++L K
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAK 67
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 502 EFIGVPKTGSGKTLAYILPAIVHI 573
+ + TGSGKTLA+++P ++ +
Sbjct: 775 DVVACAHTGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 502 EFIGVPKTGSGKTLAYILPAIVHI 573
+ + TGSGKTLA+++P ++ +
Sbjct: 775 DVVACAHTGSGKTLAFLIPFVIKL 798
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 583 VGXLCAQWLARCRPTFCRNPFWVRQ*ILSRHSYRPALSLNGRRFFV 446
+G ++L+ C C P W + I S + P LS G FF+
Sbjct: 67 IGKSALKFLSECSSNTCLEPNWAVRLIDSLPTKPPGLSRKGPFFFI 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,804,761
Number of Sequences: 27780
Number of extensions: 343532
Number of successful extensions: 1147
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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