Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0867
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 107 7e-24
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 101 5e-22
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 101 5e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 73 2e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 2e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 65 5e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 64 7e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 56 3e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 50 1e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 45 4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 6e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 43 2e-04
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 42 3e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 42 5e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 41 7e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 41 0.001
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 41 0.001
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 41 0.001
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 40 0.002
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 40 0.002
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 40 0.002
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 38 0.007
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.007
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 38 0.009
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 37 0.015
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 37 0.015
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 36 0.027
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 35 0.046
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 35 0.061
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 35 0.061
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 35 0.061
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 34 0.081
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 34 0.081
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 33 0.19
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 33 0.19
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 33 0.19
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 32 0.33
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 32 0.43
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 32 0.43
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 31 1.00
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 30 1.3
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 30 1.3
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 30 1.7
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 30 1.7
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 29 2.3
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 3.0
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 4.0
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 4.0
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 29 4.0
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 4.0
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 5.3
At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ... 28 5.3
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ... 28 5.3
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 28 5.3
At2g25460.1 68415.m03049 expressed protein 28 5.3
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 28 5.3
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 28 5.3
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 7.0
At4g27510.1 68417.m03951 expressed protein ; expression support... 27 9.3
At4g22540.2 68417.m03252 oxysterol-binding family protein simila... 27 9.3
At4g22540.1 68417.m03253 oxysterol-binding family protein simila... 27 9.3
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 9.3
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 9.3
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 9.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 107 bits (257), Expect = 7e-24
Identities = 57/149 (38%), Positives = 77/149 (51%), Gaps = 1/149 (0%)
Frame = +2
Query: 233 SPR-LGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT*TTNRL 589
PDYV + VK G+ EPTPIQ+QGWP+AM G++L+ + K + +
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166
Query: 590 FGEVMVRLLWSLAPTRELAQPXSASCCRF 676
++ LAPTRELA +F
Sbjct: 167 LAHGDGPIVLVLAPTRELAVQIQQEASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 101 bits (242), Expect = 5e-22
Identities = 50/137 (36%), Positives = 77/137 (56%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT*TTNRLFG 595
+ + + +G+ EPTPIQAQGWP+A+ G++L+ + K L + G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 596 EVMVRLLWSLAPTRELA 646
+ ++ LAPTRELA
Sbjct: 235 QDDGPIVLILAPTRELA 251
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 101 bits (242), Expect = 5e-22
Identities = 50/137 (36%), Positives = 77/137 (56%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT*TTNRLFG 595
+ + + +G+ EPTPIQAQGWP+A+ G++L+ + K L + G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 596 EVMVRLLWSLAPTRELA 646
+ ++ LAPTRELA
Sbjct: 235 QDDGPIVLILAPTRELA 251
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/79 (43%), Positives = 46/79 (58%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLAYPK 523
QAQ WPIAM G++++A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVST 648
++ + + KTGSGKTL Y++P +H+ R GP LV + ++T
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELAT 244
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/79 (43%), Positives = 46/79 (58%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLAYPK 523
QAQ WPIAM G++++A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVST 648
++ + + KTGSGKTL Y++P +H+ R GP LV + ++T
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELAT 244
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/79 (43%), Positives = 46/79 (58%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLAYPK 523
QAQ WPIAM G++++A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVST 648
++ + + KTGSGKTL Y++P +H+ R GP LV + ++T
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELAT 244
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/88 (32%), Positives = 50/88 (56%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLAYPK 523
Y++PT IQ Q PI +SG++++ K
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIGIAK 273
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/41 (53%), Positives = 32/41 (78%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALV 621
++ IG+ KTGSGKT A++LP IVHI QP ++R +GPI ++
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVI 306
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 66.5 bits (155), Expect = 2e-11
Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Frame = +2
Query: 269 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT*TTNRLFGEVMVRLL 616
+ G+ PTPIQAQ WPIA+ ++++A K K R +L
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVL 511
Query: 617 WSLAPTRELAQPXSASCCRF 676
LAPTRELA RF
Sbjct: 512 -ILAPTRELATQIQDEALRF 530
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVST 648
++ + + KTGSGKTL Y++PA + + R +GP L+ + ++T
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELAT 521
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/88 (34%), Positives = 47/88 (53%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLAYPK 523
+ Y++P PIQAQ PI MSG++ + K
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIGVAK 441
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALV 621
++ IGV KTGSGKTL ++LP + HI QPP+ GDGPI LV
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLV 474
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/88 (32%), Positives = 47/88 (53%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLAYPK 523
+ Y++P PIQ Q PI MSG++ + K
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIGVAK 574
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALV 621
++ IGV KTGSGKTL ++LP + HI QPP+ GDGPI LV
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLV 607
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/89 (30%), Positives = 49/89 (55%)
Frame = +2
Query: 245 GFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 424
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIV---HINXQPPIRRGD 603
KD G+ L ++ IG+ TGSGKTL ++LP I+ PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 604 GPIALV 621
GPIALV
Sbjct: 173 GPIALV 178
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/77 (29%), Positives = 43/77 (55%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 460
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 461 PIQAQGWPIAMSGKNLL 511
PIQ QG P+ ++G++++
Sbjct: 171 PIQVQGLPVILAGRDMI 187
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAI---VHINXQPPIRRGDGPIALV 621
++ IG+ TGSGKTL ++LP I + PI G+GPI L+
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLI 227
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 45.2 bits (102), Expect = 4e-05
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Frame = +2
Query: 335 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 503 NLLAYPKRVPAKRWPTSCQPLCT*TTNRLFGEVMVRLLWSLAPTRELA 646
A K + C L G +R + L+P RELA
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPSTDG---IRAV-ILSPARELA 223
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 353 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 311 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 484
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 485 IAMSGKNLLA 514
A++GK+LLA
Sbjct: 143 AALTGKSLLA 152
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/92 (31%), Positives = 44/92 (47%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K C
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK-----TGAFCI 210
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELAQPXSASC 667
T ++ E V L PTRELA S C
Sbjct: 211 PTLEKIDPENNVIQAVILVPTRELALQTSQVC 242
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPI---RRGDGPIALV 621
++ IG+ +TGSGKT A++LP + +I+ PP+ +GP A+V
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVV 394
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Frame = +2
Query: 332 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 512 AYPKR---------VPAKRWPTSCQPLCT*TTNRLFGEVMVRLLWSLAPTRELAQPXSAS 664
+ +P + + P+ N G V +APTRELAQ
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMS--EENETEGPYAV----VMAPTRELAQQIEEE 408
Query: 665 CCRFWTHILWF 697
+F H L F
Sbjct: 409 TVKF-AHYLGF 418
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/99 (27%), Positives = 44/99 (44%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
FE+ + G+ G++ P+PIQ + PIA++G+++LA K K C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK-----TAAFCI 187
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELAQPXSASCCRFWTHI 688
++ + V + PTRELA S C H+
Sbjct: 188 PVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL 226
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/99 (27%), Positives = 44/99 (44%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
FE+ + G+ G++ P+PIQ + PIA++G+++LA K K C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK-----TAAFCI 187
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELAQPXSASCCRFWTHI 688
++ + V + PTRELA S C H+
Sbjct: 188 PVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL 226
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 493
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 494 SGKNLLAYPK 523
G++L+ K
Sbjct: 150 DGRDLIGIAK 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI 573
++ IG+ KTGSGKTLA+ +PAI+H+
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHV 176
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELAQPXSASC 667
N + M+ L PTRELA S C
Sbjct: 186 IDPNNNVIQAMI-----LVPTRELALQTSQVC 212
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELAQPXSASC 667
N + M+ L PTRELA S C
Sbjct: 186 IDPNNNVIQAMI-----LVPTRELALQTSQVC 212
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 431 VKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT*TTNRLFGEV-MV 607
V + G+ P+PIQAQ WPIAM ++++A K K R+ + M
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM--HLQRIHNDSRMG 301
Query: 608 RLLWSLAPTRELAQPXSASCCRF 676
+ L+PTRELA +F
Sbjct: 302 PTILVLSPTRELATQIQVEALKF 324
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVST 648
++ + + KTGSGKTL Y++P +H+ R GP LV + ++T
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELAT 315
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 326 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 263 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA 514
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE N V +K GYK PTPIQ + P+ +SG +++A
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 502 EFIGVPKTGSGKTLAYILPAIVHINXQPP 588
+ + + +TGSGKT A+++P + + P
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP 95
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVHINXQPPIRR 597
KD G + + L K+ + KTG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 500 KNLLAYPK 523
K+++A K
Sbjct: 84 KDVVARAK 91
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAI 564
K+ + KTGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.1 bits (77), Expect = 0.046
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHI-NXQPPIRRGDGPIALVFGAYQRVSTTXFRKLLQIL 678
TG+GKT+AY+ P I H+ P + R G ALV + + + L ++L
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLL 128
Score = 30.7 bits (66), Expect = 1.00
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG++ PT +QAQ P+ +SG+++L
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 34.7 bits (76), Expect = 0.061
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAI 564
K+ G R + + + ++ +G +TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG+ T IQA+ P M G+++L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 34.7 bits (76), Expect = 0.061
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRR 597
K+ + KTG+GKT+A++LP+I + PP R
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR 150
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPK 523
F++ +G++ G+K T +Q P+ + GK++LA K
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAK 125
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAI 564
K+ G Q + + K+ +G +TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 34.3 bits (75), Expect = 0.081
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVHINXQPP 588
KD G + + L K+ + KTG+GKT+A++LP+I + PP
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPK 523
+ +K GY+ T +Q PI + GK++LA K
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAK 99
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.3 bits (75), Expect = 0.081
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 430 CKDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAI 564
C+ G + + L + K+ IG+ +TGSGKT A+ +P +
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +1
Query: 454 TDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVHINXQ 582
TD S++ + + ++ +G +TGSGKTLA+++P + ++ +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 430 CKDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVHINXQP 585
CK+ G+++ + + ++ +G+ +TGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
FE ++ + K +G ++PTP+Q P ++G+++L
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 487 SYVWKEFIGVPKTGSGKTLAYILPAI 564
+Y K+ IG +TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 31.9 bits (69), Expect = 0.43
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVH-INXQPPIRRGDGPIALVFGAYQRVS---TTXFRKL 666
++ IG +TG+GKTLA+ +P I I RG P+ LV + ++ FR+
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRES 201
Query: 667 LQILDT 684
LDT
Sbjct: 202 APSLDT 207
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVH-INXQPPIRRGDGP 609
K G+++ + L + ++ IG +TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 610 IALVFGAYQRVS---TTXFRKLLQILDT 684
LV + ++ FR+ LDT
Sbjct: 192 QCLVLAPTRELARQVEKEFRESAPSLDT 219
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 439 NGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIAL 618
+G+ + + L++ K+ + KTG+GK++A++LPAI + +G +A
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 619 VF 624
+F
Sbjct: 406 IF 407
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/91 (27%), Positives = 42/91 (46%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 451
K D H +L P+E + + H+V + VE ++ E+ F + VQ+ K +G
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 216
Query: 452 EPTPIQAQGWPIAMSGKNLLAYPKRVPAKRW 544
T + Q W +LL + + +PA RW
Sbjct: 217 -ATLVICQ-WGFDDEANHLLMH-RNLPAVRW 244
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/91 (27%), Positives = 42/91 (46%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 451
K D H +L P+E + + H+V + VE ++ E+ F + VQ+ K +G
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 292
Query: 452 EPTPIQAQGWPIAMSGKNLLAYPKRVPAKRW 544
T + Q W +LL + + +PA RW
Sbjct: 293 -ATLVICQ-WGFDDEANHLLMH-RNLPAVRW 320
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -2
Query: 616 KQSDHHLSE*AVGXLCAQWLARCR-PTFCRNPFWVR 512
K + HL L W+ +C FC NP W+R
Sbjct: 390 KMTKTHLGAKKPSRLILSWITKCHFQMFCGNPMWIR 425
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 439 NGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIAL 618
+G+ + + L++ K+ + KTG+GK++A++LPAI + +G +A
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 619 VF 624
+F
Sbjct: 453 IF 454
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 427 RCKDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAI 564
+ K NG++ +S + +G +TG GKTLA++LP +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPIL 155
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHI 573
TGSGKTLAY+LP + I
Sbjct: 156 TGSGKTLAYLLPILSEI 172
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 230 ASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 410 PDYVQQGVKTM 442
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 230 ASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 410 PDYVQQGVKTM 442
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHINXQPPIR 594
TGSGKTL+Y LP IV + P+R
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR 93
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 523 TGSGKTLAYILPAI 564
TGSGKTLAY+LP +
Sbjct: 158 TGSGKTLAYLLPIV 171
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 203 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 24
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 383
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 439 NGLQRTDAHSSSRLADSYVWKEFIGVPKTGSG 534
N R + SSSR++++Y ++F P+TGSG
Sbjct: 2 NRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSG 33
>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 406
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 439 NGLQRTDAHSSSRLADSYVWKEFIGVPKTGSG 534
N R + SSSR++++Y ++F P+TGSG
Sbjct: 2 NRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSG 33
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQ 582
K I ++GSGKTLAY++P I + +
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREE 439
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 150 EKNYRRICCLLQIWNHRFHGYY 85
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI---NXQPP 588
K+ + TGSGKTLA++LP I I N PP
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI---NXQPP 588
K+ + TGSGKTLA++LP I I N PP
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 433 KDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLAYILPAI 564
+D+G R + + K+ I +TGSGKT Y+ P I
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPII 139
>At4g27510.1 68417.m03951 expressed protein ; expression supported
by MPSS
Length = 677
Score = 27.5 bits (58), Expect = 9.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 489 LCLERIYWRTQNGFR 533
+C+ER+YW+ N FR
Sbjct: 250 MCVERLYWKKGNAFR 264
>At4g22540.2 68417.m03252 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 510
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +1
Query: 370 GS*SYSIL*RSKFS*LCATRCKDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLA 546
G +S L R K+S C+T +G Q + S + KEF P GS LA
Sbjct: 52 GKHEFSSLGRGKYS-ECSTTASSDGKQEFEDVSEEDEPSFHDTKEFFNEPNIGSESNLA 109
>At4g22540.1 68417.m03253 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 721
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +1
Query: 370 GS*SYSIL*RSKFS*LCATRCKDNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGKTLA 546
G +S L R K+S C+T +G Q + S + KEF P GS LA
Sbjct: 263 GKHEFSSLGRGKYS-ECSTTASSDGKQEFEDVSEEDEPSFHDTKEFFNEPNIGSESNLA 320
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,146
Number of Sequences: 28952
Number of extensions: 319833
Number of successful extensions: 1071
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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