Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0866
(345 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 114 4e-27
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 114 4e-27
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 114 4e-27
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 1.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 3.3
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 24 5.8
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 24 5.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 7.6
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 114 bits (274), Expect = 4e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FR+PY ++T E F+ + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 52.0 bits (119), Expect = 3e-08
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
+YTGQFVYCGK A L VGNV+PVG MP
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMP 107
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 114 bits (274), Expect = 4e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FR+PY ++T E F+ + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 52.0 bits (119), Expect = 3e-08
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
+YTGQFVYCGK A L VGNV+PVG MP
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMP 107
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 114 bits (274), Expect = 4e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FR+PY ++T E F+ + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 52.0 bits (119), Expect = 3e-08
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
+YTGQFVYCGK A L VGNV+PVG MP
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMP 107
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
VH + +++KTR + +PKP+H
Sbjct: 294 VHLKKNFEWKTRGTKYSLPKPVH 316
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 44 QRKGAGSVFVSHTKKRKGAPKLRSLD 121
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 24.2 bits (50), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 297 SFHNKQIGLCRGFGTMKSSFLVLNLYGSRK 208
S HN IG C+G + +FL+L LY S +
Sbjct: 579 SRHNPHIGYCQGMNVI-GAFLLL-LYASEE 606
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 5.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 65 VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
V+ + ++KGA LD A +H + + + HDP +G LA
Sbjct: 254 VYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGWHLA 298
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 86 SSCEKRKLNRHPYAEHVLHDP 24
SSC+K R Y EHV P
Sbjct: 725 SSCKKECGKRRMYCEHVCQSP 745
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,890
Number of Sequences: 5004
Number of extensions: 25253
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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