Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0866
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      124   2e-29
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    27   3.9  
08_01_0397 - 3509186-3510291,3510322-3512335                           27   5.2  
07_01_0173 - 1212858-1213805,1214982-1215642,1215699-1215724,121...    26   6.9  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  124 bits (298), Expect = 2e-29
 Identities = 56/83 (67%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
           V FR P+++K +KELF+  + ++
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMY 83



 Score = 49.2 bits (112), Expect = 9e-07
 Identities = 17/27 (62%), Positives = 25/27 (92%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           +YTGQFVYCG++ATL +GNV+P+ ++P
Sbjct: 82  MYTGQFVYCGRRATLSIGNVLPIRSVP 108


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 184 RCTFGCCTLPRSIQVQDKEGALHCPEASTQANLFIVE 294
           RCT G CTL  S  V   EG L+C    +Q  LF+V+
Sbjct: 138 RCTHGGCTLSPSNNV-THEGKLYCKTHHSQ--LFMVK 171


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 133
           +GR  RA RKG    F+S  ++R     +++L+ +E+
Sbjct: 749 VGRTGRAGRKGFAVTFISEEEERYAPDLVKALELSEQ 785


>07_01_0173 -
           1212858-1213805,1214982-1215642,1215699-1215724,
           1216037-1216121,1216382-1216404,1216463-1216465
          Length = 581

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 291 HNKQIGLCRGFGTMKSSFLVLNLYG 217
           HNKQ  +  GFG + +S L + LYG
Sbjct: 167 HNKQHKISVGFGQLHTSDLKVMLYG 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,036,318
Number of Sequences: 37544
Number of extensions: 174455
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)