Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0866
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   8e-34
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)        69   1e-12
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)              27   3.1  
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 27   4.1  
SB_15623| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                26   7.1  
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)                  26   7.1  
SB_57628| Best HMM Match : DUF1083 (HMM E-Value=7)                     26   7.1  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             26   7.1  
SB_9616| Best HMM Match : PTS_IIB_fruc (HMM E-Value=2.3)               26   9.4  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  138 bits (335), Expect = 8e-34
 Identities = 63/83 (75%), Positives = 71/83 (85%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
           V FRDPY++K RKELF+  + ++
Sbjct: 61  VVFRDPYRYKLRKELFVATEGMY 83



 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 19/27 (70%), Positives = 24/27 (88%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           +YTGQF+YCGKKA L++GN +PVG MP
Sbjct: 82  MYTGQFIYCGKKAALQIGNCLPVGIMP 108


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +2

Query: 149 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPKPLH 271
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+  + ++
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41



 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 19/27 (70%), Positives = 24/27 (88%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           +YTGQF+YCGKKA L++GN +PVG MP
Sbjct: 40  MYTGQFIYCGKKAALQIGNCLPVGIMP 66


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 227 TCMDRGSVQQPKVHLYQGHGLY 162
           T  D G +Q P  HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536


>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 140 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 27
           I +V +  + +   R++SS C KRKL R    E+ + D
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKD 507


>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
          Length = 565

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 193 FGCCTLPRSIQVQDK 237
           FGCC +P ++  QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
 Frame = +2

Query: 47  RKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVV----------KDIIHDPGRGAPL 196
           R+ + ++ V H  K  G     SL    RHG + GVV          K+++H    G P 
Sbjct: 407 REDSPAISVPHLIKDLGLVVTLSLAVKSRHGNVSGVVAVDAPLDTLMKEVVHFSTTGLPY 466

Query: 197 AVV 205
           A+V
Sbjct: 467 AIV 469


>SB_15623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 65  VFVSHTKKRKGAPKLRSLDYAERHGYI-KGVVKDIIHD 175
           VFV   K++KG P   S+D  ++ G + KG+V   I D
Sbjct: 61  VFVKIMKEKKGRPSTWSVDDVKKLGSLAKGLVPSEIRD 98


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 270  CRGFGTMKSSFLVLNLYGSRKCTTAKG 190
            C+ +     +   +NL GS KCT AKG
Sbjct: 2565 CKSYALNGCNQFCINLKGSFKCTCAKG 2591


>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
          Length = 635

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 26  GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIH 172
           G+V+   ++G G+VF +HT +   AP ++ L   E+      +  D++H
Sbjct: 553 GKVVYGAKRGKGAVFQTHTAEL--APSVQELAALEQQAQTSFI--DLMH 597


>SB_57628| Best HMM Match : DUF1083 (HMM E-Value=7)
          Length = 365

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 143 CIHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 27
           C+HD++   K +        SCEK K+NR+   + V H+
Sbjct: 105 CVHDIKLAKKKDA----VLVSCEKHKINRNKDIKGVQHN 139


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 211 PRSIQVQDKEGALHCPEASTQ 273
           PRSIQV+D  G L CP+   Q
Sbjct: 765 PRSIQVEDPRG-LACPQTQQQ 784


>SB_9616| Best HMM Match : PTS_IIB_fruc (HMM E-Value=2.3)
          Length = 462

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 65  VFVSHTKKRKGAPKLRSLDYAERHGYI-KGVVKDIIHD 175
           VFV   K++KG P   S D  ++ G + KG+V   I D
Sbjct: 46  VFVKIMKEKKGRPSTWSADDVKKLGSLAKGLVPSEIRD 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,891
Number of Sequences: 59808
Number of extensions: 203378
Number of successful extensions: 437
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)