Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0866
(345 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 137 1e-32
CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 137 1e-32
BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 137 1e-32
BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 137 1e-32
BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 137 1e-32
BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 137 1e-32
BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 137 1e-32
AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 137 1e-32
AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 pr... 129 3e-30
BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. 62 5e-10
Y10256-1|CAA71306.1| 947|Homo sapiens NIK, serine/threonine pro... 29 2.9
DQ314874-1|ABC40733.1| 947|Homo sapiens mitogen-activated prote... 29 2.9
BC035576-1|AAH35576.1| 947|Homo sapiens mitogen-activated prote... 29 2.9
BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,... 28 6.8
AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor ... 28 6.8
Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein. 28 9.0
>Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FRDPY+FK R ELFI + +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L +GNV+PVG MP
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMP 108
>CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein.
Length = 257
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FRDPY+FK R ELFI + +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L +GNV+PVG MP
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMP 108
>BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FRDPY+FK R ELFI + +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L VGNV+PVG MP
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMP 108
>BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FRDPY+FK R ELFI + +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L +GNV+PVG MP
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMP 108
>BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FRDPY+FK R ELFI + +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L VGNV+PVG MP
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMP 108
>BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FRDPY+FK R ELFI + +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L VGNV+PVG MP
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMP 108
>BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FRDPY+FK R ELFI + +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L +GNV+PVG MP
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMP 108
>AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FRDPY+FK R ELFI + +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L +GNV+PVG MP
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMP 108
>AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8
protein.
Length = 130
Score = 129 bits (311), Expect = 3e-30
Identities = 58/79 (73%), Positives = 67/79 (84%)
Frame = +2
Query: 35 IRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 214
IR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FR
Sbjct: 1 IRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFR 60
Query: 215 DPYKFKTRKELFIVPKPLH 271
DPY+FK R ELFI + +H
Sbjct: 61 DPYRFKKRTELFIAAEGIH 79
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L +GNV+PVG MP
Sbjct: 78 IHTGQFVYCGKKAQLNIGNVLPVGTMP 104
>BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein.
Length = 211
Score = 62.1 bits (144), Expect = 5e-10
Identities = 27/37 (72%), Positives = 30/37 (81%)
Frame = +2
Query: 161 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPKPLH 271
DIIHDPGRGAPLA V FRDPY+FK R ELFI + +H
Sbjct: 1 DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIH 37
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
++TGQFVYCGKKA L +GNV+PVG MP
Sbjct: 36 IHTGQFVYCGKKAQLNIGNVLPVGTMP 62
>Y10256-1|CAA71306.1| 947|Homo sapiens NIK, serine/threonine
protein-kinase protein.
Length = 947
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 287 INKLACVEASGQ*RAPSLS*TCMDRGSVQQPKVHLYQGHGL 165
++KLACV++ P L +C+ RG+ ++ V Y H L
Sbjct: 301 LSKLACVDSPKPLPGPHLEPSCLSRGAHEKFSVEEYLVHAL 341
>DQ314874-1|ABC40733.1| 947|Homo sapiens mitogen-activated protein
kinase kinase kinase 14 protein.
Length = 947
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 287 INKLACVEASGQ*RAPSLS*TCMDRGSVQQPKVHLYQGHGL 165
++KLACV++ P L +C+ RG+ ++ V Y H L
Sbjct: 301 LSKLACVDSPKPLPGPHLEPSCLSRGAHEKFSVEEYLVHAL 341
>BC035576-1|AAH35576.1| 947|Homo sapiens mitogen-activated protein
kinase kinase kinase 14 protein.
Length = 947
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 287 INKLACVEASGQ*RAPSLS*TCMDRGSVQQPKVHLYQGHGL 165
++KLACV++ P L +C+ RG+ ++ V Y H L
Sbjct: 301 LSKLACVDSPKPLPGPHLEPSCLSRGAHEKFSVEEYLVHAL 341
>BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,
alpha protein.
Length = 457
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 258 GTMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 145
G + FLV++ Y +R C KG P PG + L TPL
Sbjct: 9 GPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48
>AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor
alpha 2 isoform protein.
Length = 54
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 258 GTMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 145
G + FLV++ Y +R C KG P PG + L TPL
Sbjct: 9 GPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48
>Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein.
Length = 4684
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 146 KGVVKDIIHDPGRGAPLAVVHFRDPYKFKT 235
KG+V +HD A AV +RDPY KT
Sbjct: 3887 KGLVGPELHDRLLSAERAVTGYRDPYTEKT 3916
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,724,041
Number of Sequences: 237096
Number of extensions: 1010429
Number of successful extensions: 1574
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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