Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0866
         (345 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT014913-1|AAT47764.1|  256|Drosophila melanogaster RH21963p pro...   152   1e-37
AY071342-1|AAL48964.1|  256|Drosophila melanogaster RE37829p pro...   152   1e-37
AF098520-1|AAF06828.1|  256|Drosophila melanogaster ribosomal pr...   152   1e-37
AE014296-477|AAF47660.1|  256|Drosophila melanogaster CG1263-PB,...   152   1e-37
AE014296-476|AAF47659.1|  256|Drosophila melanogaster CG1263-PA,...   152   1e-37
BT022891-1|AAY55307.1|  579|Drosophila melanogaster IP12501p pro...    75   2e-14
AE014298-1529|AAF47983.2| 2602|Drosophila melanogaster CG2174-PA...    32   0.17 
AE014298-1528|ABI30975.1| 2693|Drosophila melanogaster CG2174-PB...    32   0.17 
DQ494533-1|ABF29833.1| 2445|Drosophila melanogaster leucine-rich...    27   5.0  
AE014297-2835|AAF55793.2| 2351|Drosophila melanogaster CG5483-PA...    27   5.0  
AE014134-2359|AAF53310.1|  417|Drosophila melanogaster CG16850-P...    27   8.7  

>BT014913-1|AAT47764.1|  256|Drosophila melanogaster RH21963p
           protein.
          Length = 256

 Score =  152 bits (368), Expect = 1e-37
 Identities = 69/83 (83%), Positives = 76/83 (91%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
           VHFRDPY++K RKELFI P+ +H
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMH 83



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           ++TGQFVYCG+KATL++GNVMP+  MP
Sbjct: 82  MHTGQFVYCGRKATLQIGNVMPLSQMP 108


>AY071342-1|AAL48964.1|  256|Drosophila melanogaster RE37829p
           protein.
          Length = 256

 Score =  152 bits (368), Expect = 1e-37
 Identities = 69/83 (83%), Positives = 76/83 (91%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
           VHFRDPY++K RKELFI P+ +H
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMH 83



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           ++TGQFVYCG+KATL++GNVMP+  MP
Sbjct: 82  MHTGQFVYCGRKATLQIGNVMPLSQMP 108


>AF098520-1|AAF06828.1|  256|Drosophila melanogaster ribosomal
           protein L8 protein.
          Length = 256

 Score =  152 bits (368), Expect = 1e-37
 Identities = 69/83 (83%), Positives = 76/83 (91%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
           VHFRDPY++K RKELFI P+ +H
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMH 83



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           ++TGQFVYCG+KATL++GNVMP+  MP
Sbjct: 82  MHTGQFVYCGRKATLQIGNVMPLSQMP 108


>AE014296-477|AAF47660.1|  256|Drosophila melanogaster CG1263-PB,
           isoform B protein.
          Length = 256

 Score =  152 bits (368), Expect = 1e-37
 Identities = 69/83 (83%), Positives = 76/83 (91%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
           VHFRDPY++K RKELFI P+ +H
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMH 83



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           ++TGQFVYCG+KATL++GNVMP+  MP
Sbjct: 82  MHTGQFVYCGRKATLQIGNVMPLSQMP 108


>AE014296-476|AAF47659.1|  256|Drosophila melanogaster CG1263-PA,
           isoform A protein.
          Length = 256

 Score =  152 bits (368), Expect = 1e-37
 Identities = 69/83 (83%), Positives = 76/83 (91%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
           VHFRDPY++K RKELFI P+ +H
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMH 83



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           ++TGQFVYCG+KATL++GNVMP+  MP
Sbjct: 82  MHTGQFVYCGRKATLQIGNVMPLSQMP 108


>BT022891-1|AAY55307.1|  579|Drosophila melanogaster IP12501p
           protein.
          Length = 579

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 31/38 (81%), Positives = 35/38 (92%)
 Frame = +2

Query: 158 KDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPKPLH 271
           KDIIHDPGRGAPLAVVHFRDPY++K RKELFI P+ +H
Sbjct: 1   KDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMH 38



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
           ++TGQFVYCG+KATL++GNVMP+  MP
Sbjct: 37  MHTGQFVYCGRKATLQIGNVMPLSQMP 63


>AE014298-1529|AAF47983.2| 2602|Drosophila melanogaster CG2174-PA,
            isoform A protein.
          Length = 2602

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 149  GVVKDIIHDPGRGAPLAVVHF-RDPYKFKTRKELFIVPKPLHRPICL 286
            GVV  ++   G G   A + + R P+K + RKE+F   +P+  P+ L
Sbjct: 1680 GVVSGVLMGSGSGGSTACLTYNRVPWKLRVRKEVFQPHEPIGPPVAL 1726


>AE014298-1528|ABI30975.1| 2693|Drosophila melanogaster CG2174-PB,
            isoform B protein.
          Length = 2693

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 149  GVVKDIIHDPGRGAPLAVVHF-RDPYKFKTRKELFIVPKPLHRPICL 286
            GVV  ++   G G   A + + R P+K + RKE+F   +P+  P+ L
Sbjct: 1771 GVVSGVLMGSGSGGSTACLTYNRVPWKLRVRKEVFQPHEPIGPPVAL 1817


>DQ494533-1|ABF29833.1| 2445|Drosophila melanogaster leucine-rich
            repeat kinase protein.
          Length = 2445

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 199  CCTLPRSIQVQDKEGALHCPEASTQANLF 285
            CC +  +I + D  G LH    ST A+LF
Sbjct: 2127 CCLVGEAIWMGDVSGNLHAYSTSTYAHLF 2155


>AE014297-2835|AAF55793.2| 2351|Drosophila melanogaster CG5483-PA
            protein.
          Length = 2351

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 199  CCTLPRSIQVQDKEGALHCPEASTQANLF 285
            CC +  +I + D  G LH    ST A+LF
Sbjct: 2033 CCLVGEAIWMGDVSGNLHAYSTSTYAHLF 2061


>AE014134-2359|AAF53310.1|  417|Drosophila melanogaster CG16850-PA
           protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 104 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHF-RDPYKFKTRKELFIVPKPLHR 274
           +LR   +A  HG+         H P   AP  + H  + PY+        + PK +HR
Sbjct: 102 QLRMHSHAHSHGHAYAHSHSHSHGPAHAAPAPLSHHGQTPYQQFASSHGRVSPKLVHR 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,371
Number of Sequences: 53049
Number of extensions: 293646
Number of successful extensions: 644
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 819378027
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)