Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0866
(345 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 124 1e-29
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 124 1e-29
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 117 2e-27
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 27 2.5
At2g42730.1 68415.m05292 F-box family protein contains F-box dom... 27 3.4
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 26 5.9
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ... 26 5.9
At5g56370.2 68418.m07037 F-box family protein contains F-box dom... 26 7.7
At5g56370.1 68418.m07036 F-box family protein contains F-box dom... 26 7.7
At3g21900.1 68416.m02761 receptor-like protein kinase-related co... 26 7.7
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 26 7.7
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 124 bits (300), Expect = 1e-29
Identities = 57/83 (68%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FR P++FK +KELF+ + ++
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMY 83
Score = 49.2 bits (112), Expect = 7e-07
Identities = 19/27 (70%), Positives = 25/27 (92%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
+YTGQF+YCGKKATL VGNV+P+ ++P
Sbjct: 82 MYTGQFLYCGKKATLVVGNVLPLRSIP 108
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 124 bits (300), Expect = 1e-29
Identities = 57/83 (68%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 203 VHFRDPYKFKTRKELFIVPKPLH 271
V FR P++FK +KELF+ + ++
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMY 83
Score = 49.2 bits (112), Expect = 7e-07
Identities = 19/27 (70%), Positives = 25/27 (92%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
+YTGQF+YCGKKATL VGNV+P+ ++P
Sbjct: 82 MYTGQFLYCGKKATLVVGNVLPLRSIP 108
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 117 bits (281), Expect = 2e-27
Identities = 55/84 (65%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Frame = +2
Query: 23 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 200 VVHFRDPYKFKTRKELFIVPKPLH 271
V FR P+++ +KELF+ + ++
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMY 84
Score = 49.2 bits (112), Expect = 7e-07
Identities = 18/27 (66%), Positives = 25/27 (92%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMP 344
+YTGQ++YCGKKA L VGNV+P+G++P
Sbjct: 83 MYTGQYLYCGKKANLMVGNVLPLGSIP 109
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 83 KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI-V 256
K +KG KL R +H + +KD+ D GR P+A+ ++K+LF+ +
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLSI 1181
Query: 257 PK 262
PK
Sbjct: 1182 PK 1183
>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
Pfam:PF00646
Length = 737
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 247 ELLPCLELVWIAEVYNSQRCTSTRVM 170
E LPCLELV I V NS +T M
Sbjct: 408 EKLPCLELVKICVVNNSNNLQTTMEM 433
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 71 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIH-DPGRGAPLAV 202
VS+++ R+G P +RS + RH ++G D ++ + RGA + +
Sbjct: 359 VSNSRARRGFPTVRSGSSSPRHWGMRGWFHDGVNWEEPRGAEIVL 403
>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
ribosomal protein L2 [Gossypium arboreum] GI:17933133;
contains Pfam profile PF00181: Ribosomal Proteins L2,
RNA binding domain
Length = 307
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 41 AQRKGAGSVFVSHTKKRKGAPK--LRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHF 211
A R +G + V H R G K LR +D +R G+V+ I +DP R + +A V +
Sbjct: 20 AGRNSSGRITVFH---RGGGSKRLLRRIDL-KRSTSSMGIVESIEYDPNRSSQIAPVRW 74
>At5g56370.2 68418.m07037 F-box family protein contains F-box domain
Pfam:PF00646
Length = 421
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 92 KGAPKLRSLDYAERHGY 142
K +PKLRSL E HGY
Sbjct: 305 KHSPKLRSLKLNETHGY 321
>At5g56370.1 68418.m07036 F-box family protein contains F-box domain
Pfam:PF00646
Length = 421
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 92 KGAPKLRSLDYAERHGY 142
K +PKLRSL E HGY
Sbjct: 305 KHSPKLRSLKLNETHGY 321
>At3g21900.1 68416.m02761 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069
Length = 250
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 246 SSFLVLNLYGSRKCTTAKGAPLPGSW 169
SS + N Y + KC +G PGSW
Sbjct: 29 SSLNMTNAYLNHKCLANQGKYKPGSW 54
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 SHFQLQELLSF--HNKQIGLCRGFGTMKSSFLVLNLYGS 214
S F Q LL F H +GL R G++ +V N +GS
Sbjct: 617 SRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGS 655
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,190,029
Number of Sequences: 28952
Number of extensions: 137137
Number of successful extensions: 318
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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