Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0865
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 35 0.009
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 33 0.022
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 29 0.46
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 28 0.81
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 1.9
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 4.3
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 25 5.7
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 5.7
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 5.7
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 10.0
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 25 10.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 10.0
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 34.7 bits (76), Expect = 0.009
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +2
Query: 263 PKINTPV-LELSPRVLRKRKSLMPEKSKPS-NRRVNMKPRKHVVAENANPKQIEALYLNK 436
PK+N + + +LRKRK+ PE+ +P+ ++R + AE +P++I A L
Sbjct: 422 PKVNELLQADFKQAILRKRKNESPEEVEPAKHQRTDTSTENQETAEVLDPEEIAAAELAN 481
Query: 437 TVKSLSQTL--ETIYEEPKAESXD 502
++ TL ET+ +P+ E+ +
Sbjct: 482 ITEAAIATLPQETVV-QPEGEAPE 504
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 33.5 bits (73), Expect = 0.022
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = -2
Query: 279 GVLILGTSGSARPLPLYLNVPF*LVTRTPLSSVPCFFSVIYQFNSSLWFHDRSQKA*IST 100
G + LG S SA PL + + TR SS+P FFS +YQ SL+
Sbjct: 1394 GAIRLG-SDSATENPLESGISY---TRGAFSSIPIFFSALYQSVRSLFIRSTPTNGEFEN 1449
Query: 99 ALFIQ 85
A F+Q
Sbjct: 1450 AAFLQ 1454
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 29.1 bits (62), Expect = 0.46
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 305 LRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPK 409
L +RK++MP+K K + + N +P K N N K
Sbjct: 282 LFRRKTIMPKKDKKPSHKSNGRPNKLTAFFNKNSK 316
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 28.3 bits (60), Expect = 0.81
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 111 TPFASDRGTIMKN*IDI*R*KNMEHSRVECELPTKMAHLDI-MEVDELNQMFLKL 272
TP +S R +N +D + HS LP K+AH + +EV E N + ++
Sbjct: 138 TPNSSSRSLFPQNGVDTTTSRQKLHSSGRFPLPAKLAHRSVEVEVAESNALVSRI 192
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 308 RKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKS 448
RK+++ K +P +RVN + +E NP + +YLN+ VK+
Sbjct: 531 RKKRNEDSWKRRPPAKRVNYQKFGDNFSEIGNPFCCDWVYLNEMVKA 577
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 299 RVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNK 436
R LR+RKSL+ + K + +N + +V E A K+ +L LN+
Sbjct: 224 RSLRRRKSLLSRQVKADDAVINYQDGSPIV-EKAYLKRHRSLRLNE 268
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 444 LTVLLRYNASICFGFAFSATTCLRGFIFTRRFEGLLFSGINDFLLRKTL 298
+ +LLR NA I S T +R IFT ++ F + + LL+ T+
Sbjct: 264 IKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVLE-LLQSTI 311
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 5.7
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 137 HNEELN*YMTLKKHGTLESGVRVTN*NGTFRYNGSGRAEPDVPKINTPVLELSPRVLRKR 316
H +L Y+ + L S V G+FR G G E VP N VL R+++ +
Sbjct: 446 HQVDLENYV-FTEGSRLMSNKAVKLPEGSFRRTGKGYEEIHVPAPNKAVLGADERLVKIK 504
Query: 317 KSLMPEKS 340
+ +PE S
Sbjct: 505 E--LPEWS 510
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 5.7
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 272 NTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKSL 451
N P SP + + + ++K + PR + + NAN + A N T+K++
Sbjct: 743 NKPAALKSPLIKKNIQQAELAQNKQQSSVTTASPRSNAL--NANTPKAAAPSSNVTMKNV 800
Query: 452 SQTLET 469
+ LET
Sbjct: 801 TSILET 806
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -2
Query: 234 LYLNVPF*LVTRTPLSSVPC---FFSVIYQFNSSLWFH 130
L ++VPF + TP S+ C FF+++ S++ H
Sbjct: 21 LVISVPFFFLQMTPFYSILCFLSFFALLLHLPCSIYSH 58
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 395 NANPKQIEALYLNKTVKSLSQTLETIYEEPK 487
N P I L + L TLETIY E K
Sbjct: 697 NTTPSSISKLSIQPPTFQLFSTLETIYLELK 727
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 260 VPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIE 418
+PK P L + + +R + L+ +++ P+N RV + + E + Q+E
Sbjct: 1 MPKFKGPGLSVLKKKIRDNERLLKKENLPANIRVEHERALLGLQEQLSMAQLE 53
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 227 RYNGSGRAEPDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVN 364
R + + R + D+PK N V LSP + SL E+S R N
Sbjct: 107 RSSSNVRQQRDIPKQNFKVRPLSPLRGQSPASLRSEESFTLKERQN 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,906
Number of Sequences: 5004
Number of extensions: 45881
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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