Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0865
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 33 0.15
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 30 1.1
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 30 1.4
01_03_0142 + 13031297-13031568,13031724-13031952,13032608-13032715 29 2.5
12_01_0092 + 726892-727247,727338-727347 29 3.3
11_01_0092 + 683869-684224,684315-684324 29 3.3
08_01_0253 + 2072766-2072954,2073526-2073591,2073755-2073877,207... 28 4.4
06_01_0667 + 4878784-4878900,4879016-4879118,4879256-4879341,487... 28 4.4
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 28 4.4
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310... 28 4.4
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 28 5.8
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +2
Query: 233 NGSGRAEPDVPKINTPVLELSPRVLRKRKSL--MPEKSKPSNRRVNMKPRKHVVAENANP 406
+G GR P+ P +E+ R+ R++ ++ P S R+ +P V E+A P
Sbjct: 405 SGPGRPLRAAPQ-QKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKP 463
Query: 407 KQIEALYLNKTVKSLSQTLETIYEE 481
K + L N +++ + L+ Y+E
Sbjct: 464 KIYDGLESNSRLEAAKRRLQERYQE 488
>05_05_0034 -
21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 266 KINTPVLELSPRVLRKRKSLMPEKSKPSNRR-VNMKPRKHVVAENANPKQIE 418
K+ T + P+V+R+ + + S S + +N KP++ V +N NP +E
Sbjct: 353 KLKTRRRKHRPKVIREDRPAKKQMSTTSKEKPLNQKPKRKYVWKNRNPSSLE 404
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 266 KINTPVLELSPRVLRKRKSLMPEKSKPSNRR-VNMKPRKHVVAENANPKQIE 418
K+ T + P+V+R+ + + + S + +N KP++ V +N NP +E
Sbjct: 358 KLKTRRRKHRPKVIREDRPAKKQMATTSEEKPLNQKPKRKYVRKNRNPSSLE 409
>01_03_0142 + 13031297-13031568,13031724-13031952,13032608-13032715
Length = 202
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 297 GDNSRTGVLILGTSGSARPLPLY 229
GDN RT V + ++RPLP Y
Sbjct: 37 GDNKRTSVFVSAVMAASRPLPRY 59
>12_01_0092 + 726892-727247,727338-727347
Length = 121
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 286 KNRCVNFRNIWFSSSTSIISKCAILVGNSHST-LECS 179
KN +FRN+ ++ SI SKC + V ST ++CS
Sbjct: 82 KNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCS 118
>11_01_0092 + 683869-684224,684315-684324
Length = 121
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 286 KNRCVNFRNIWFSSSTSIISKCAILVGNSHST-LECS 179
KN +FRN+ ++ SI SKC + V ST ++CS
Sbjct: 82 KNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCS 118
>08_01_0253 +
2072766-2072954,2073526-2073591,2073755-2073877,
2073913-2074017,2074555-2074635,2074715-2074807,
2075023-2075098,2075182-2075261,2075359-2075430,
2075553-2075612,2075775-2075871,2076137-2076200,
2076303-2076362,2076539-2076608
Length = 411
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 419 PLFALGSHFRRQRVYEVSYSLGGLKVCFFLALTTFFYAKLLVIIQE 282
PL+A+G +F YEV ++GG +V + L +A L I E
Sbjct: 39 PLYAIGFNFLDFHYYEVFATVGGNRVTTYSCLKDGNFAILQAYIDE 84
>06_01_0667 +
4878784-4878900,4879016-4879118,4879256-4879341,
4879434-4879496,4879589-4879831,4880639-4880728,
4881403-4881600
Length = 299
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 432 LRYNASICFGFAFSATTCLRGFIF 361
L AS CFGFAF++ + G IF
Sbjct: 238 LNLAASFCFGFAFTSREAVTGSIF 261
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 215 NGTFRYNGSGRAEPDVPKINT-PVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVA 391
+G R + S P+++T + +P + + + E KPS+ R R+ +
Sbjct: 10 HGVGRQDRSSPGGGGAPQVDTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPIL 69
Query: 392 ENANPKQIEALYLNK 436
N PKQI+ + N+
Sbjct: 70 SNIEPKQIKVWFQNR 84
>03_01_0401 -
3108477-3108689,3108787-3108933,3109022-3109234,
3109321-3109938,3110045-3110584,3110941-3111041,
3111208-3111325,3111450-3111535,3111888-3112002
Length = 716
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Frame = +1
Query: 163 DAEKT---WNTREWSASYQLKWHI 225
D EKT W +W+ S LKWHI
Sbjct: 544 DFEKTLEYWQQDKWNGSLSLKWHI 567
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 266 KINTPVLELSPRVLRKRKSLMPEKSKPSNRR 358
+ NT S R R++K + EKSKP N+R
Sbjct: 968 RCNTSNRTPSRRTSRRKKGVSAEKSKPKNKR 998
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,788
Number of Sequences: 37544
Number of extensions: 260876
Number of successful extensions: 707
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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