Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0865
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              33   0.16 
SB_34700| Best HMM Match : Seryl_tRNA_N (HMM E-Value=5.3)              32   0.28 
SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)                    30   1.1  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       30   1.1  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.9  
SB_16029| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_9369| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_58772| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     29   3.4  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   28   4.5  
SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)             28   4.5  
SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)                    28   5.9  
SB_18852| Best HMM Match : Chitin_bind_4 (HMM E-Value=7.4)             28   5.9  
SB_48445| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +2

Query: 266  KINTPVLELSPRVLRKRKSLMPEKSKPSNRRVN-MKPRKHVVAENANPKQIEALYLNKTV 442
            KI+T  LE   R L K ++ + EK +   R+VN ++  K++V  + N  + +  Y N+ +
Sbjct: 1423 KIST--LEQQIRDLTKDRNSLDEKIEELRRQVNTLRDEKNIVERDLNELKSKIDYYNQEI 1480

Query: 443  KSLSQTLETI 472
            +S  +T+E +
Sbjct: 1481 ESRDKTIEDL 1490


>SB_34700| Best HMM Match : Seryl_tRNA_N (HMM E-Value=5.3)
          Length = 167

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 288 SRTGVLILGTSGSARPLPLYLNVPF*LVTRTPLSSVPCFFSVIYQFNSSLWFHDRSQ 118
           S+T  L+LG     R  PL +N P     R P+ ++ C FS   + N    F D+++
Sbjct: 25  SQTDALLLGRDKEKRETPLSINWP-----RHPIKALGCAFSYDNEMNDKFNFEDKAE 76


>SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)
          Length = 1025

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 294 DNSRTGVLILGTSGSARPLPLYLNVPF*LVTRTPLSSVPCFFSVIYQFNSSLWFHDRSQ 118
           + S+T  L LG     R  PL +N P     R P+ ++ C FS   + N    F D+++
Sbjct: 546 NKSKTDALWLGRDEQKRETPLGVNWP-----RHPIKALGCAFSYDNEMNDKFNFEDKAE 599


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 308  RKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTV-KSLSQTLETIYE-E 481
            +K + + P+K KP+ R       KH+V E   P   E +   K + K +++  + + E +
Sbjct: 5142 KKVEKVKPKKEKPTEREAKPLEEKHLVEEKELPVSAEKVVEEKPLEKPITRKEDKVEEVK 5201

Query: 482  PKAE 493
            PK E
Sbjct: 5202 PKKE 5205



 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 308  RKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKSLSQTLETIYEEPK 487
            +K + + P+K KP+ RR      K +V E   P   E +   K ++      E   EE K
Sbjct: 5353 KKVEEVKPKKEKPTERRAKPLEEKPLVEEKELPVSAEKVVEEKPLEKQITRKEKTAEEVK 5412


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -1

Query: 508  FCIXAFSFGFFIYSL*CLRKRFNSFVEIQCLYLLWVRIFGDNVFTRF 368
            FCI A S       L C    F  FV ++ LYL  +RIF  +V  RF
Sbjct: 1921 FCIFALSVSLRYLCL-CAICIFAVFVSLRYLYLCGIRIFALSVSLRF 1966


>SB_16029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 293 SPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIE 418
           +PR L   ++ +P  S P  R    +P K  + EN+NP+++E
Sbjct: 214 NPRELEPLRTRIPVNSNPRKR----EPTKTRIRENSNPRELE 251


>SB_9369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +2

Query: 248 AEPDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALY 427
           AEP    I++ VLEL    +     L+ E  +    R +++     + E  +    E L 
Sbjct: 129 AEPSSKAISSDVLELMAVQISPDNELLKEHKQEEESRKSLEKDISALQEKLSLADQERLR 188

Query: 428 LNKTVKSLSQTLETIYEEPKA 490
           ++K ++ L      + EE K+
Sbjct: 189 MSKEIELLDNKSSALEEESKS 209


>SB_58772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +2

Query: 260 VPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQI 415
           V K+ T       R+++ R  ++PE  KP  R ++     H V   +  +++
Sbjct: 43  VTKVKTTQTVAKSRIIKTRTEVLPESQKPEIRDISQSETDHEVPPRSPTERV 94


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 145 RIKLIYDAEKTWNTREWSASYQLKW 219
           ++ + YD E+ W TREW A Y   W
Sbjct: 58  KVLVEYDGEE-WTTREWLAVYTKSW 81


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
 Frame = +2

Query: 188 ESGVRVTN*NGTFRYNGSGRAEPDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRR--- 358
           ESG  V    GT R  G+G  E +    N         ++  + S+   K   S +R   
Sbjct: 86  ESGPTVETCTGTKRKRGTGIDEGNDGASNPHYRRAKQALVEVKSSISSNKGNASKKRKTS 145

Query: 359 --VNMKPRKHVVAENANPKQIEALYLNKTVKSLSQTLETIYEEPKAE 493
              + K + H+V E+A+ +  E  +++K   S+ Q    + EE K E
Sbjct: 146 CKESAKKKDHLVVESADSEN-ELDFVDKPQTSIPQ--HVLGEEHKLE 189


>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
          Length = 816

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 104 EIYAFCERSWNHNEELN*YMTLKKHGTLESGVRVTN 211
           + YAFCE   NHN E++ +M L+++   ++    TN
Sbjct: 607 DTYAFCEEKGNHNGEVH-HMILEENSKEKNHFSKTN 641


>SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)
          Length = 647

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 218 GTFRYNGSGRAEPDVPKINTPVLELSPRVLRKRKSLMPEKSK 343
           G  +   + R  P   K+ +P   LSPR  +K  S  PE+ +
Sbjct: 237 GNIKLEATPREAPSEGKVGSPSYPLSPRNNQKSSSPSPERQR 278


>SB_18852| Best HMM Match : Chitin_bind_4 (HMM E-Value=7.4)
          Length = 143

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 308 RKRKSLMPEKSKPSNRRVNMKPRKHVV 388
           R R+ L P+ S P +  ++++PR H++
Sbjct: 64  RPRRDLNPQSSDPKSDALSIRPRGHII 90


>SB_48445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +2

Query: 266 KINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVK 445
           ++ T  + + P   R+  ++ P   +   RRVN + +K+      N    E    +K  K
Sbjct: 42  RVYTATVRMYPSQPRQDMAVSPVLGEKRRRRVNRRLKKNPEEAEGNSTPSEKNLPSKCTK 101

Query: 446 SLSQTLETIYEEPKAESXDTEL 511
           SLS      Y++ KA    T++
Sbjct: 102 SLSWEQ---YQQAKAAPKPTKM 120


>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 227  RYNGSGRAEPDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRK 379
            R    G   PD+ ++   V E   R LR     +PE++ P+   V ++P +
Sbjct: 1238 RVKRGGNIAPDIGEVVLLVGESKNRELRAASKQIPERAPPAASEVIVRPTR 1288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,420,950
Number of Sequences: 59808
Number of extensions: 310655
Number of successful extensions: 781
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)