Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0865
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 280 RCVNFRNIWFSSSTSI-ISKCAILVGNSHSTLECSM 176
           RCV   + WF+ ST+I I+K   L+      L+CS+
Sbjct: 50  RCVFVLDPWFAGSTNIGINKWRFLL-QCLEDLDCSL 84


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 275 TPVLELSPRVLRKRKSL 325
           T  ++  PR+LRKRK L
Sbjct: 401 TAAVDEWPRLLRKRKEL 417


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 275 TPVLELSPRVLRKRKSL 325
           T  ++  PR+LRKRK L
Sbjct: 454 TAAVDEWPRLLRKRKEL 470


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 224 FRYNGSGRAEPDVPKINT 277
           FRY   GR+   +P +N+
Sbjct: 60  FRYECEGRSAGSIPGVNS 77


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 224 FRYNGSGRAEPDVPKINT 277
           FRY   GR+   +P +N+
Sbjct: 60  FRYECEGRSAGSIPGVNS 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,029
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)