Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0865
(559 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 35 0.032
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 33 0.17
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c... 30 0.91
At3g59200.1 68416.m06600 F-box family protein contains F-box dom... 30 1.2
At5g53020.1 68418.m06585 expressed protein 29 1.6
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related... 29 1.6
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 29 2.8
At5g67180.1 68418.m08469 AP2 domain-containing transcription fac... 28 4.9
At3g17330.1 68416.m02215 expressed protein contains Pfam profile... 28 4.9
At3g13460.2 68416.m01694 expressed protein contains Pfam profile... 28 4.9
At3g13460.1 68416.m01693 expressed protein contains Pfam profile... 28 4.9
At1g55500.1 68414.m06349 expressed protein contains Pfam profile... 28 4.9
At1g48110.1 68414.m05369 expressed protein contains Pfam profile... 28 4.9
At5g16610.2 68418.m01945 expressed protein 27 6.4
At5g16610.1 68418.m01944 expressed protein 27 6.4
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 27 6.4
At2g36610.1 68415.m04488 homeobox-leucine zipper family protein ... 27 6.4
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 27 6.4
At2g22560.1 68415.m02674 kinase interacting protein-related simi... 27 6.4
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 27 8.5
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 27 8.5
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 35.1 bits (77), Expect = 0.032
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 275 TPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKSLS 454
TP+ +L ++ KR + P K+ + + V P K V E PK+ EA K VK
Sbjct: 317 TPIEKLLEKIPSKRPYVPPPKASVATKEVKPVPTKPVTQEPTAPKEDEAPPKEKNVKPRP 376
Query: 455 QTLETIYEEPK 487
+ YE+ K
Sbjct: 377 LSPYASYEDLK 387
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 254 PDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPK--QIEALY 427
P +P+I P L P V + +PE KP ++ P+ + + PK +I+
Sbjct: 228 PKMPEIQKPELPKLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKPELPKMPEIQKPE 287
Query: 428 LNKTVKSLSQTLETIYEEPKAES 496
L K + L T+ E PK+E+
Sbjct: 288 LPKVPEVPKPELPTVPEVPKSEA 310
>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain; snoR29 gene for small
nucleolar RNA GI:15706258
Length = 917
Score = 30.3 bits (65), Expect = 0.91
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 DVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKP--RKHVVAENANPKQIEALY- 427
D +I+ P L P+++ +R+S MP + S+ + N P + H NA +Q + Y
Sbjct: 472 DEGQISDPAKNLDPKIVPERQSNMPSRIADSSSK-NPAPSGQTHAQLLNALQQQAWSNYG 530
Query: 428 -LNKTVKSLSQTLETIYEEPKA 490
L++ +K+++Q+ + P+A
Sbjct: 531 GLSEVIKNINQSHASSSGPPQA 552
>At3g59200.1 68416.m06600 F-box family protein contains F-box domain
Pfam:PF00646
Length = 520
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 434 KTVKSLSQTLETIYEEPKAESXDTELLVHVK*KD 535
KT+K L+ E YE PK+ S DT LV+++ D
Sbjct: 211 KTLKRLTFFCEETYENPKSVSFDTPNLVYLEYSD 244
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 311 KRKSLMPEKSKPSNRRVNMKPRKHVVAENANP---KQIEALYLNKTVKSLSQTLETIYEE 481
+ + L+PE + N K K +++ +NP + AL ++ +K L Q L +
Sbjct: 486 ENERLLPENECTKREKANSKESKSLISSTSNPPWRMDLHALGVSYKIKRLKQQLMMLERY 545
Query: 482 -PKAESXDTE 508
K ES +TE
Sbjct: 546 IGKPESQETE 555
>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
protein (PAKRP1)
Length = 1292
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 263 PKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTV 442
P + +P L +SP + RKSL + S+ S +++V E A+P + +N
Sbjct: 669 PVLKSPTLSVSPTIRNSRKSL--KTSELSTASQKDSEGENLVTEAADPSPATSKKMNNCS 726
Query: 443 KSLSQTLETIY 475
+LS ++
Sbjct: 727 SALSTQKSKVF 737
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
gb|U06698 neuronal kinesin heavy chain from Homo sapiens
and contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA
MKRP1 mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 890
Score = 28.7 bits (61), Expect = 2.8
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = -2
Query: 447 DLTVLLRYNASICFGF--AFSATTCLRGF--IFTRRFEGLLFSGINDFLLRKTLGDNSRT 280
D T+ YN S+C+GF F T R I ++ SGIN + + + +T
Sbjct: 103 DYTIRNEYNPSLCYGFDRVFGPPTTTRRVYDIAAQQVVSGAMSGINGTVFAYGVTSSGKT 162
Query: 279 GVLILGTSGSARPLPLYLNVPF*LVTRTP 193
+ G S +PL + F ++ TP
Sbjct: 163 HTM-HGEQRSPGIIPLAVKDVFSIIQETP 190
>At5g67180.1 68418.m08469 AP2 domain-containing transcription
factor, putative similar to (SP:P47927) Floral homeotic
protein APETALA2. [Mouse-ear cress] {Arabidopsis
thaliana}
Length = 352
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 182 TLESGVRVTN*NGTFRYNGSGRAEPDVPKINTPVLELSPRVLRKRKS 322
++E GVR + N + + SG P+ P+I+ P+ + S R R R S
Sbjct: 50 SMEPGVRWSGFNSVGKSDPSGSGRPEEPEISPPI-KKSRRGPRSRSS 95
>At3g17330.1 68416.m02215 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 595
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 178 WNTREWSASYQLKWHI 225
W +WS S+ +KWHI
Sbjct: 353 WQQDKWSGSFPVKWHI 368
>At3g13460.2 68416.m01694 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 664
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 178 WNTREWSASYQLKWHI 225
W +W+ S+ LKWHI
Sbjct: 518 WQQDKWTGSFPLKWHI 533
>At3g13460.1 68416.m01693 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 667
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 178 WNTREWSASYQLKWHI 225
W +W+ S+ LKWHI
Sbjct: 521 WQQDKWTGSFPLKWHI 536
>At1g55500.1 68414.m06349 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 549
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 178 WNTREWSASYQLKWHI 225
W +W+ S+ LKWHI
Sbjct: 437 WQQDKWTGSFPLKWHI 452
>At1g48110.1 68414.m05369 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 639
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 178 WNTREWSASYQLKWHI 225
W +WS S+ +KWHI
Sbjct: 404 WQQDKWSGSFPVKWHI 419
>At5g16610.2 68418.m01945 expressed protein
Length = 673
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = +2
Query: 323 LMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKSLSQTLETIYEEPKAESXD 502
L PE S P N PRK V NP + + T + + + E+ ++
Sbjct: 233 LSPEASLPEVSSSNKNPRKRVKRVQRNPLPLNENEIQSTQVKVDPLADCVMEDNDEKNPV 292
Query: 503 TELLVHVK 526
T + VK
Sbjct: 293 TSKQIPVK 300
>At5g16610.1 68418.m01944 expressed protein
Length = 529
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = +2
Query: 323 LMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKSLSQTLETIYEEPKAESXD 502
L PE S P N PRK V NP + + T + + + E+ ++
Sbjct: 89 LSPEASLPEVSSSNKNPRKRVKRVQRNPLPLNENEIQSTQVKVDPLADCVMEDNDEKNPV 148
Query: 503 TELLVHVK 526
T + VK
Sbjct: 149 TSKQIPVK 156
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 311 KRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQ 412
K K L +K +PS+RR N R + NAN KQ
Sbjct: 478 KLKPLPWDKVRPSSRRTNTWDRLPYNSSNANSKQ 511
>At2g36610.1 68415.m04488 homeobox-leucine zipper family protein
similar to homeobox protein PpHB8 (GP:7415628)
[Physcomitrella patens]; contains PfamPF00046: Homeobox
domain
Length = 185
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/87 (22%), Positives = 36/87 (41%)
Frame = +2
Query: 233 NGSGRAEPDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQ 412
N E K+ + L+ R ++ L P++ N MK K + P+Q
Sbjct: 63 NSFNGQEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKEL---GLQPRQ 119
Query: 413 IEALYLNKTVKSLSQTLETIYEEPKAE 493
I + N+ + ++ LE +YE + E
Sbjct: 120 IAVWFQNRKARWKNKQLEHLYESLRQE 146
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +2
Query: 245 RAEPDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEAL 424
R PD + + +P + + + E KPS+ R R+ + N PKQI+
Sbjct: 14 RESPDKGLDSGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVW 73
Query: 425 YLNK 436
+ N+
Sbjct: 74 FQNR 77
>At2g22560.1 68415.m02674 kinase interacting protein-related similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]; weak similarity to Myosin II heavy chain,
non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
Length = 891
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 227 RYNGSGRAEPDVPKINTPVLELSPRVLRKRKSLMPEKS 340
R N SG P+VPK+ PV +L V K L P KS
Sbjct: 66 RSNISGANVPNVPKL--PVKDLKSAVRVATKKLQPRKS 101
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 320 SLMPEKSKPSNRRVNMKPRKHVVAENANPKQI 415
+L PEK+ P+N+ ++ +P+K + ++P I
Sbjct: 429 ALCPEKAVPTNQDLDTEPKKETEEDVSSPADI 460
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 27.1 bits (57), Expect = 8.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 254 PDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNM-KPRKHVVAENANPKQIEALYL 430
PD PK+ T +L+ + R + KS+ N + N +H + N + EA L
Sbjct: 2201 PDAPKLVTLILKSLETLTRAANAAEQLKSEVPNEKKNRDSDERH--DSHGNSTETEADEL 2258
Query: 431 NKTVKSLSQTLE 466
N+ SL Q +
Sbjct: 2259 NQNNSSLQQVTD 2270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,743
Number of Sequences: 28952
Number of extensions: 227837
Number of successful extensions: 680
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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