Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0864
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   162   4e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   162   4e-42
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  162 bits (393), Expect = 4e-42
 Identities = 84/171 (49%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
 Frame = +2

Query: 257 KDFLAGGISAAVSKTAVAPXESVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 436
           KDFLAGG++AA+SKT VAP E VKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 437 FWRGNFANVIRYFPTQALNFAFKDSTSRCSSAALTRRRSSGVTSLVIWXXXXXXXXXLCA 616
           +WRGN ANVIRYFPTQALNFAFKD   +     +   +++      +            +
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVD--KNTQFLRYFVGNLASGGAAGATS 129

Query: 617 SCTXXXXXXXXXXXXXXRAMASVNSPVS--ENCISKIFKSDGLIGLYRXFG 763
            C                  A      +   NC++KIFK+DG+ GLYR FG
Sbjct: 130 LCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180



 Score = 99.1 bits (236), Expect = 4e-23
 Identities = 47/76 (61%), Positives = 51/76 (67%)
 Frame = +1

Query: 475 PDPGAQLRLQGQYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLA 654
           P        + +YKQVFLGGVDK TQF RYF            TSLCFVYPLDFARTRLA
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLA 144

Query: 655 ADVGKGDGQREFSGLG 702
           ADVGK  G+REF+GLG
Sbjct: 145 ADVGKAGGEREFTGLG 160



 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/53 (26%), Positives = 31/53 (58%)
 Frame = +2

Query: 311 PXESVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 469
           P ++V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 26.6 bits (56), Expect = 0.25
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +2

Query: 269 AGGISAAVSKTAVAPXESVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 448
           +GG + A S   V P +  +  L    V K    ++ + G+ +   +I K  G+   +RG
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRG 178

Query: 449 NFANVIRYFPTQALNFAFKDS 511
              +V      +A  F F D+
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDT 199



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 225 MSNLADPVAFLR 260
           MS LADPVAF +
Sbjct: 1   MSGLADPVAFAK 12


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  162 bits (393), Expect = 4e-42
 Identities = 84/171 (49%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
 Frame = +2

Query: 257 KDFLAGGISAAVSKTAVAPXESVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 436
           KDFLAGG++AA+SKT VAP E VKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 437 FWRGNFANVIRYFPTQALNFAFKDSTSRCSSAALTRRRSSGVTSLVIWXXXXXXXXXLCA 616
           +WRGN ANVIRYFPTQALNFAFKD   +     +   +++      +            +
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVD--KNTQFLRYFVGNLASGGAAGATS 129

Query: 617 SCTXXXXXXXXXXXXXXRAMASVNSPVS--ENCISKIFKSDGLIGLYRXFG 763
            C                  A      +   NC++KIFK+DG+ GLYR FG
Sbjct: 130 LCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180



 Score = 99.1 bits (236), Expect = 4e-23
 Identities = 47/76 (61%), Positives = 51/76 (67%)
 Frame = +1

Query: 475 PDPGAQLRLQGQYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLA 654
           P        + +YKQVFLGGVDK TQF RYF            TSLCFVYPLDFARTRLA
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLA 144

Query: 655 ADVGKGDGQREFSGLG 702
           ADVGK  G+REF+GLG
Sbjct: 145 ADVGKAGGEREFTGLG 160



 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/53 (26%), Positives = 31/53 (58%)
 Frame = +2

Query: 311 PXESVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 469
           P ++V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 26.6 bits (56), Expect = 0.25
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +2

Query: 269 AGGISAAVSKTAVAPXESVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 448
           +GG + A S   V P +  +  L    V K    ++ + G+ +   +I K  G+   +RG
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRG 178

Query: 449 NFANVIRYFPTQALNFAFKDS 511
              +V      +A  F F D+
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDT 199



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 225 MSNLADPVAFLR 260
           MS LADPVAF +
Sbjct: 1   MSGLADPVAFAK 12


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 490 ERLGREVPDDVGEVTTPE 437
           ER  RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 490 ERLGREVPDDVGEVTTPE 437
           ER  RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 15/67 (22%), Positives = 24/67 (35%)
 Frame = -1

Query: 637  RSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQRRRGTPACTVLEGEVERLGREVPDDV 458
            R+    R+ ++      + P+  RS A     C+  R TP   + +   E      P   
Sbjct: 1301 RAMTEARNQQQQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLAQDSSEDESYRGPSAS 1360

Query: 457  GEVTTPE 437
            G    PE
Sbjct: 1361 GGRPVPE 1367


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 700 RDRRIHAGHRPY 665
           R  R+H G RPY
Sbjct: 55  RHLRVHTGERPY 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,035
Number of Sequences: 438
Number of extensions: 3896
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)