Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0863
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   1.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   4.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.1  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = -3

Query: 242 ASAHY*NRINRLKIRTSXI--FHISRXHXCXRTELPTLSNTNSMKKYLKQYHYY 87
           ASA Y N  N      + I  F + +      +  P LS TNS       Y YY
Sbjct: 206 ASATYTNSANSSIWSPASIDSFTLEQHRSWCSSSQPVLSTTNSTTNCYNNYPYY 259


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 243 PRTTHSPRAANPFERLSTINLQNH 314
           P T H    + P  + + I LQ H
Sbjct: 9   PPTPHESNTSTPVSKSAFIELQQH 32


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +2

Query: 152 CXCXGGNEKC 181
           C C  GN KC
Sbjct: 696 CFCENGNNKC 705


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,325
Number of Sequences: 336
Number of extensions: 1543
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)