Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0863
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    31   0.094
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   3.5  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.5  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   6.2  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.2  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.2  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   8.2  

>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 31.1 bits (67), Expect = 0.094
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 344 DGSKVTTVVATPGQGPDRPQXVSYADMKXIGNGXFXVVYQXKLCDT 481
           D S + T V T G   ++ + +SY   + +G+G F VV Q KL  T
Sbjct: 3   DDSHLETKVVTDGTTGEK-KTISYEPCRVLGSGSFGVVIQAKLVGT 47


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 23/77 (29%), Positives = 30/77 (38%)
 Frame = -3

Query: 314 VVLEVDCRKSFERICCPRRMRGPRASAHY*NRINRLKIRTSXIFHISRXHXCXRTELPTL 135
           VVL VD  K +  I   +R   P        R N+ K   S + HI+  H      L T+
Sbjct: 72  VVLRVDKEKGY--IDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAEKH---NVPLETM 126

Query: 134 SNTNSMKKYLKQYHYYE 84
             T     Y K  H Y+
Sbjct: 127 YTTIGWPLYRKYGHAYD 143


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 182 HISRXHXCXRTELPTLSNTNSMKKYLKQYHYYEI-KNQNKIVPL 54
           +I+R H    TEL  LS+   + ++L   +  E  KN+ K   L
Sbjct: 194 YINRVHRSSETELVQLSSIKVLDRFLSDIYLVEAEKNEEKCTVL 237


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 179 ISRXHXCXRTELPTLSNTNSMKKYLKQYHYYEIKN 75
           I+  H   R +L  LS T   ++  K+Y YY  +N
Sbjct: 425 ITFLHLLKRLQLQNLSITEVFEQMSKKYGYYTTQN 459


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 286 LSNGFAALGECVVLGRPLIIE 224
           +S+GFAAL   + LGR ++++
Sbjct: 194 ISSGFAALAYSLCLGRRIVVD 214


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 222 ISIMSGRPRTTHSPRAANPFERLSTIN 302
           I ++     T  SP++ NP E  +T+N
Sbjct: 23  IDVIETMRETNESPKSQNPSEEATTVN 49


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 407 VSYADMKXIGNGXFXVVYQXKLCDT 481
           +SY   K +G+G F VV Q  L ++
Sbjct: 30  LSYTSSKVVGSGSFGVVMQVHLIES 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,569,000
Number of Sequences: 5004
Number of extensions: 24812
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)