BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0863 (493 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 1e-14 SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6 SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19) 28 3.6 SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 27 6.4 >SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 634 Score = 76.2 bits (179), Expect = 1e-14 Identities = 36/57 (63%), Positives = 43/57 (75%), Gaps = 1/57 (1%) Frame = +2 Query: 326 VKIS-SKDGSKVTTVVATPGQGPDRPQXVSYADMKXIGNGXFXVVYQXKLCDTGELI 493 +KIS KDGSK+TTVVAT G PDR Q +SY D K IGNG F VVYQ ++CD+ EL+ Sbjct: 1 MKISRDKDGSKITTVVATTGSLPDRTQEISYTDTKVIGNGSFGVVYQARMCDSTELV 57 >SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2656 Score = 29.5 bits (63), Expect = 1.6 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +2 Query: 296 NQPPKPPLGGVKISSKDGSKVTTVVATPGQGPD 394 +QPPKPP ++ +DG+ T V + P D Sbjct: 1580 SQPPKPPTESPQVYDEDGNPSTAVKSEPNPSLD 1612 >SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19) Length = 735 Score = 28.3 bits (60), Expect = 3.6 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 413 YADMKXIGNGXFXVVYQXKLCDTGELI 493 YAD++ IG+G F VY + T E++ Sbjct: 462 YADLREIGHGSFGAVYYARNVRTNEVV 488 >SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) Length = 843 Score = 27.5 bits (58), Expect = 6.4 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 326 RLREVVLEVDCRKSFERICCPRRMRGPRASAHY*NRINRL 207 R + +V V KS + I CP+R R+ AH R RL Sbjct: 157 RKKRLVCHVPTEKSGKSIMCPQRKAVSRSRAHREKRKKRL 196 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,529,656 Number of Sequences: 59808 Number of extensions: 199255 Number of successful extensions: 563 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 555 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 563 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1050596726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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