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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0863
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   1e-14
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.6  
SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19)                  28   3.6  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    27   6.4  

>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 36/57 (63%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
 Frame = +2

Query: 326 VKIS-SKDGSKVTTVVATPGQGPDRPQXVSYADMKXIGNGXFXVVYQXKLCDTGELI 493
           +KIS  KDGSK+TTVVAT G  PDR Q +SY D K IGNG F VVYQ ++CD+ EL+
Sbjct: 1   MKISRDKDGSKITTVVATTGSLPDRTQEISYTDTKVIGNGSFGVVYQARMCDSTELV 57


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 296  NQPPKPPLGGVKISSKDGSKVTTVVATPGQGPD 394
            +QPPKPP    ++  +DG+  T V + P    D
Sbjct: 1580 SQPPKPPTESPQVYDEDGNPSTAVKSEPNPSLD 1612


>SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19)
          Length = 735

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 YADMKXIGNGXFXVVYQXKLCDTGELI 493
           YAD++ IG+G F  VY  +   T E++
Sbjct: 462 YADLREIGHGSFGAVYYARNVRTNEVV 488


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 326 RLREVVLEVDCRKSFERICCPRRMRGPRASAHY*NRINRL 207
           R + +V  V   KS + I CP+R    R+ AH   R  RL
Sbjct: 157 RKKRLVCHVPTEKSGKSIMCPQRKAVSRSRAHREKRKKRL 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,656
Number of Sequences: 59808
Number of extensions: 199255
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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