Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0863
(493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL034393-5|CAA22311.1| 362|Caenorhabditis elegans Hypothetical ... 47 6e-06
AF159950-1|AAD45354.1| 362|Caenorhabditis elegans GSK-3 protein. 47 6e-06
Z79598-5|CAB01863.1| 367|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z95122-2|CAB08355.1| 363|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z48230-2|CAA88264.1| 363|Caenorhabditis elegans Hypothetical pr... 28 3.2
U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL032618-4|CAB63367.1| 353|Caenorhabditis elegans Hypothetical ... 27 7.4
CU457741-2|CAM36343.1| 574|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical ... 27 9.8
>AL034393-5|CAA22311.1| 362|Caenorhabditis elegans Hypothetical
protein Y18D10A.5 protein.
Length = 362
Score = 47.2 bits (107), Expect = 6e-06
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 335 SSKDGSKVTTVVATPG-QGPDRPQXVSYADMKXIGNGXFXVVYQXKLCDTGELI 493
S K G +VT VVA+ G D+ +SY D K IGNG F VV+ KL T E++
Sbjct: 9 SLKSGKQVTMVVASVATDGVDQQVEISYYDQKVIGNGSFGVVFLAKLSTTNEMV 62
>AF159950-1|AAD45354.1| 362|Caenorhabditis elegans GSK-3 protein.
Length = 362
Score = 47.2 bits (107), Expect = 6e-06
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 335 SSKDGSKVTTVVATPG-QGPDRPQXVSYADMKXIGNGXFXVVYQXKLCDTGELI 493
S K G +VT VVA+ G D+ +SY D K IGNG F VV+ KL T E++
Sbjct: 9 SLKSGKQVTMVVASVATDGVDQQVEISYYDQKVIGNGSFGVVFLAKLSTTNEMV 62
>Z79598-5|CAB01863.1| 367|Caenorhabditis elegans Hypothetical
protein C44H4.6 protein.
Length = 367
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 362 TVVATPGQGP--DRPQXVSYADMKXIGNGXFXVVYQXKLCDTGELI 493
TV+A G G DR + + +++ IG G F VY+ L + E I
Sbjct: 18 TVMAKRGTGSKLDREVEIQFTNLQLIGTGSFGAVYKAVLRENDEPI 63
>Z95122-2|CAB08355.1| 363|Caenorhabditis elegans Hypothetical
protein F42G10.2 protein.
Length = 363
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 419 DMKXIGNGXFXVVYQXKLCDTGELI 493
D+ IGNG F VY+ + +TG+LI
Sbjct: 68 DLGAIGNGNFGTVYKMRHKETGKLI 92
>Z48230-2|CAA88264.1| 363|Caenorhabditis elegans Hypothetical
protein F42G10.2 protein.
Length = 363
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 419 DMKXIGNGXFXVVYQXKLCDTGELI 493
D+ IGNG F VY+ + +TG+LI
Sbjct: 68 DLGAIGNGNFGTVYKMRHKETGKLI 92
>U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical
protein T05A12.3 protein.
Length = 655
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 227 NNERTP*DHAFAEGSKSVRKTFDNQPPKPPLGGVKISSK 343
NN T + A K VRK F P PPL V I K
Sbjct: 361 NNGSTSSNGHSAPAKKEVRKPFQKGPTPPPLIPVAIPGK 399
>AL032618-4|CAB63367.1| 353|Caenorhabditis elegans Hypothetical
protein Y42A5A.4 protein.
Length = 353
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 413 YADMKXIGNGXFXVVYQXKLCDTGELI 493
Y + +G G + VVY+ K DTG+++
Sbjct: 4 YDRLSKLGEGSYGVVYKCKNRDTGQIV 30
>CU457741-2|CAM36343.1| 574|Caenorhabditis elegans Hypothetical
protein C42C1.2 protein.
Length = 574
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 338 SKDGSKVTTVVATPGQGPDRPQXVSYADMKXIGNGXFXVVYQXKL 472
+ DGS+ + TP R Q ++Y + + IGN + Y +L
Sbjct: 336 TSDGSRALSKDLTPASERKRLQELAYRNPELIGNSFSRLEYSKRL 380
>AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5a protein.
Length = 599
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 284 KTFDNQPPKPPLGGVKISSKDGSKVTTVVATPGQGPDRPQ 403
KT+ QPP +SK+ + +T+VA+P G RPQ
Sbjct: 335 KTYREQPPTADAPFSSDNSKEIHETSTIVASP--GVPRPQ 372
>AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5b protein.
Length = 601
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 284 KTFDNQPPKPPLGGVKISSKDGSKVTTVVATPGQGPDRPQ 403
KT+ QPP +SK+ + +T+VA+P G RPQ
Sbjct: 337 KTYREQPPTADAPFSSDNSKEIHETSTIVASP--GVPRPQ 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,831,907
Number of Sequences: 27780
Number of extensions: 151643
Number of successful extensions: 460
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -