Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0863
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   1.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.4  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 140 TLSNTNSMKKYLKQYHYYEIKNQNKIVPLQNY 45
           T+ N N+ K Y K+ +Y  I  +   VP+  Y
Sbjct: 322 TIHNNNNYKNYNKKLYYNIINIEQIPVPVPVY 353


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 95  HYYEIKNQNKIVPLQNYSIILI 30
           HYY + +QN  V +++Y   ++
Sbjct: 166 HYYPLDSQNCTVEIESYGYTVL 187


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   FNVNFEKLSK*YCNSVVELFY 70
           +N N     K YCN+  +L+Y
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   FNVNFEKLSK*YCNSVVELFY 70
           +N N     K YCN+  +L+Y
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYY 109


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 140 TLSNTNSMKKYLKQYHYYEIKNQNKIVPLQNYSI 39
           T+ N N+ K      + Y   N NK +  +NY I
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYII 122


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   FNVNFEKLSK*YCNSVVELFY 70
           +N N     K YCN+  +L+Y
Sbjct: 89  YNYNNNNYKKLYCNNYRKLYY 109


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 131 NTNSMKKYLKQYHYYEIK 78
           NTN   KY+++Y+  E K
Sbjct: 203 NTNYSSKYMREYNDPEYK 220


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 240 RPRTTHSPRAAN 275
           RPRTT  PRA +
Sbjct: 161 RPRTTFEPRATD 172


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 331 FYASERWFWRLIVESLSNGFAALGECVVLGRPLI 230
           FY   R+ +R  +E   N  A    C +LG  L+
Sbjct: 346 FYIISRYVFRSALEDYCNIVATHLVCGILGSILV 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,428
Number of Sequences: 438
Number of extensions: 1976
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)