Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0862
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 49 4e-06
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 40 0.002
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 34 0.16
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 32 0.47
11_06_0693 - 26334574-26336121 30 1.9
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074... 30 2.5
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 29 3.3
01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549... 29 3.3
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 29 5.8
06_01_0088 + 698237-698251,698738-698770,699177-699280,699382-69... 28 7.7
04_03_0513 - 16681227-16683936,16685572-16685966 28 7.7
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 28 7.7
02_05_0961 - 33103024-33103555,33107323-33107432,33107577-331077... 28 7.7
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 49.2 bits (112), Expect = 4e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILVTGI 196
+G ++ PV + LGRI N G+PID PI + I + + + E++ TGI
Sbjct: 129 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 188
Query: 197 KVVDLLAPYAKGGKIGLF 250
+D++ A+G KI LF
Sbjct: 189 STIDVMNSIARGQKIPLF 206
Score = 35.1 bits (77), Expect = 0.067
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 524 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI--TTTKKGSIT 697
G+ VL+ + ++ + A EVSA +P GY + TD+ T+ ER + GSIT
Sbjct: 307 GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRSGSIT 366
Query: 698 SV 703
+
Sbjct: 367 QI 368
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAI------HAEAPEFVDMSVQ-- 172
+G ++ PV + LGR+ N G+PID PI + I A A ++ S +
Sbjct: 89 TGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISDFDIGFAGAGSSINPSERTY 148
Query: 173 -XEILVTGIKVVDLLAPYAKGGKIGLF 250
E++ TGI +D++ A+G KI LF
Sbjct: 149 PEEMIQTGISTIDVMNSIARGQKIPLF 175
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 524 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI--TTTKKGSIT 697
G+ VL+ + ++ + A EVSA +P GY + TD+ T+ ER +KGSIT
Sbjct: 277 GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSIT 336
Query: 698 SV 703
+
Sbjct: 337 QI 338
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 33.9 bits (74), Expect = 0.16
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +2
Query: 509 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 682
FRD G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 357 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL 415
Query: 683 -----KGSITSVQAI 712
GS+T V A+
Sbjct: 416 GSPDRTGSVTIVGAV 430
Score = 31.5 bits (68), Expect = 0.83
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +3
Query: 252 ASGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISL-------K 410
A G GKTV I + ++ + + V+ G GER GN++ +++ +++ +
Sbjct: 270 AFGCGKTV-ISQALSKYSNSEA--VVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREE 323
Query: 411 DKTSKVALVYGQMNEPPGARARVALTGLTVAEY 509
+ LV N P AR TG+T+AEY
Sbjct: 324 SVMKRTTLVANTSNMPVAAREASIYTGITIAEY 356
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 32.3 bits (70), Expect = 0.47
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 509 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI------ 670
+RD G +V + D+ R+ +A E+S L +P+ GY LA + + ER
Sbjct: 343 YRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVRCL 401
Query: 671 -TTTKKGSITSVQAI 712
+ + GS+T V A+
Sbjct: 402 GSPKRDGSVTIVGAV 416
Score = 31.9 bits (69), Expect = 0.63
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +3
Query: 252 ASGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKV- 428
A G GKTV I + ++ + + V+ G GER E ++ + + + + + V
Sbjct: 256 AFGCGKTV-ISQALSKYSNSQA--VVYVGCGERGNEMAEVLMDFPQLTMTTEDGREESVM 312
Query: 429 ---ALVYGQMNEPPGARARVALTGLTVAEY 509
LV N P AR TG+T+AEY
Sbjct: 313 KRTTLVANTSNMPVAAREASIYTGITIAEY 342
>11_06_0693 - 26334574-26336121
Length = 515
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2
Query: 227 WHKERADRRLLYQLRESPXAQTCRQTLEL 141
WH A+RRLL+ L SP A+ R+ LEL
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR--RRPLEL 46
>02_03_0303 -
17506392-17506399,17507055-17507286,17507390-17507461,
17507561-17508586,17509194-17509448,17510483-17510962
Length = 690
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 204 SICSLLMPKEERLGCLASGVGKTVLIMELINNV 302
++ SLL+P EE++ + +GK+VL E ++ +
Sbjct: 286 TLSSLLVPSEEKIQAILGNLGKSVLCTEALHQI 318
>07_03_0251 +
15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 306 KAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVAL 485
+ H G S +A + RT L ++ E + + + V+G++NEP G +A + L
Sbjct: 67 RPHSG-SNYAVLTRRTHNWQGLEQDITEKVTVGTEYIVAAHVRVHGELNEPVGIQATLKL 125
Query: 486 TG 491
G
Sbjct: 126 EG 127
>01_06_0876 -
32654209-32654238,32654357-32654672,32654833-32654901,
32655238-32655275,32655418-32655478,32655550-32655617,
32655729-32655889,32656687-32656751,32656883-32656956,
32658158-32658245,32658800-32658879,32659168-32659224,
32659332-32659404,32659524-32659762,32659846-32660025,
32660150-32660440
Length = 629
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 557 FRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQA 709
F + + LG+I +G QP GT +R TT++ ++ VQA
Sbjct: 238 FHLYKENKDTQEALGKIGKMLGLQPRSFGFAGTKDKRAVTTQQVTVFKVQA 288
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 227 KGGKIGLFGEWCGQNCIDYGTDQQCCQ 307
+GG C C+ +GTD+QCC+
Sbjct: 257 RGGAAAAAVVACKSACLAFGTDEQCCR 283
>06_01_0088 +
698237-698251,698738-698770,699177-699280,699382-699457,
699987-700070,700420-700926
Length = 272
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 366 DLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYSVI 518
D+ H ++SG D+ S+VA Y +P GA + L+G T+ + SVI
Sbjct: 43 DIEHVEMQSG-----DEWSQVA--YVTFKDPQGAETALLLSGATIVDLSVI 86
>04_03_0513 - 16681227-16683936,16685572-16685966
Length = 1034
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = -3
Query: 280 INTVLPTPLAKQPNLSSFGIRSEQIDDFYTSYENLL--LHRHVDKLWSFSMNSSSLVGGD 107
I +LP L +L +F IR+ +IDD + + ++L L V K F N V GD
Sbjct: 727 IEGLLPRSLVACKDLEAFDIRNNRIDDKFPCWMSMLPKLQVLVLKSNKFVGNVGPSVPGD 786
Query: 106 GTTLVNRFADYIDDATEGFSSHRDTNW 26
+ D A+ FS W
Sbjct: 787 KNSCEFIKLRIFDLASNNFSGLLQNEW 813
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = -3
Query: 121 LVGGDGTTLVNRFADYID----DATEGF 50
L+G DG TL N AD ID DA EGF
Sbjct: 282 LIGPDGKTLNNNVADIIDEHGQDAWEGF 309
>02_05_0961 -
33103024-33103555,33107323-33107432,33107577-33107707,
33107779-33107870,33108210-33108337,33108658-33108723,
33108815-33108907,33108979-33109128,33109553-33109578,
33109674-33109826,33110140-33110228,33110335-33110418,
33110564-33110598,33110702-33110842,33111045-33111128,
33111208-33111215,33111590-33111746
Length = 692
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 252 ASGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDK 416
ASG G + + NV K H GYS F G E + ++E+ V SLK K
Sbjct: 13 ASGSGHGKKAPQELENVLKQHFGYSGFRGKQLEAIEA--VLSALMENQVASLKSK 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,467,031
Number of Sequences: 37544
Number of extensions: 474246
Number of successful extensions: 1406
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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