Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0862
(816 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 145 3e-35
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 124 1e-28
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 35 0.069
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_41051| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 31 1.5
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 30 2.6
SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4) 30 2.6
SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19) 29 4.5
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 25 5.0
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 145 bits (352), Expect = 3e-35
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = +2
Query: 2 QPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEI 181
Q +D+G PI IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV+MS + EI
Sbjct: 136 QKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEI 195
Query: 182 LVTGIKVVDLLAPYAKGGKIGLFG 253
L TGIKVVDLLAPYAKGGKIGLFG
Sbjct: 196 LETGIKVVDLLAPYAKGGKIGLFG 219
Score = 77.4 bits (182), Expect = 1e-14
Identities = 42/68 (61%), Positives = 43/68 (63%)
Frame = +2
Query: 611 SAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVXXXXXXXXXXXXXXXXXXXXXYSS 790
+ VGYQPTLATDMGTMQERITTTKKGSITSVQAIYV S
Sbjct: 247 AGVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 306
Query: 791 RAIAELGI 814
R IAELGI
Sbjct: 307 RGIAELGI 314
Score = 66.1 bits (154), Expect = 3e-11
Identities = 45/104 (43%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Frame = +3
Query: 207 ICSLLMP--KEERLGCLA-SGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 377
+ LL P K ++G +GVGKTVLIMELINNVAKAHGGYSVFAGVG + D+
Sbjct: 202 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGYQPTLATDM-G 260
Query: 378 EMIESGVISLKDKTSKVALVY---GQMNEPPGARARVALTGLTV 500
M E + K + V +Y + +P A L TV
Sbjct: 261 TMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTV 304
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 124 bits (298), Expect = 1e-28
Identities = 63/98 (64%), Positives = 71/98 (72%)
Frame = +2
Query: 515 DQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSI 694
+ +G+DVL F+DNIFRFTQAGSEVSALLGR+PSAVGYQPTLAT+MG MQERIT+TKKGSI
Sbjct: 140 EAQGKDVLFFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQERITSTKKGSI 199
Query: 695 TSVQAIYVXXXXXXXXXXXXXXXXXXXXXYSSRAIAEL 808
TSVQA+YV SR IAEL
Sbjct: 200 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAEL 237
Score = 122 bits (293), Expect = 5e-28
Identities = 66/106 (62%), Positives = 73/106 (68%), Gaps = 21/106 (19%)
Frame = +3
Query: 255 SGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKD------- 413
+GVGKTVLI ELINN+AK HGG SVFAGVGERTREGNDL EM+ESG+I D
Sbjct: 28 AGVGKTVLIQELINNIAKGHGGLSVFAGVGERTREGNDLLREMLESGIIKYGDDFMHSME 87
Query: 414 --------------KTSKVALVYGQMNEPPGARARVALTGLTVAEY 509
K SK V+GQMNEPPGARARVAL+GLT+AEY
Sbjct: 88 EGGWDLSKVDKAGMKESKATFVFGQMNEPPGARARVALSGLTIAEY 133
Score = 48.4 bits (110), Expect = 7e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +2
Query: 179 ILVTGIKVVDLLAPYAKGGKIGLFG 253
+L TGIKV+DL+ PYAKGGKIGLFG
Sbjct: 2 VLFTGIKVIDLIEPYAKGGKIGLFG 26
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/80 (35%), Positives = 48/80 (60%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILVTGI 196
+G+ + +PVG E LGR+++ +G PID +GP + A + +AP + + E ++TGI
Sbjct: 30 TGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVKAPGIIPRTSVKEPMLTGI 88
Query: 197 KVVDLLAPYAKGGKIGLFGE 256
K VD L P +G + + G+
Sbjct: 89 KAVDSLVPIGRGQRELIIGD 108
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 35.1 bits (77), Expect = 0.069
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +3
Query: 252 ASGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI---SLKDKTS 422
A G GKTV+ L ++ ++ G GER E +++ + E V ++
Sbjct: 109 AFGCGKTVISQSLSKF---SNSDVIIYVGCGERGNEMSEVLRDFPELTVEINGQVESIMK 165
Query: 423 KVALVYGQMNEPPGARARVALTGLTVAEY 509
+ ALV N P AR TG+T++EY
Sbjct: 166 RTALVANTSNMPVAAREASIYTGITLSEY 194
Score = 31.9 bits (69), Expect = 0.64
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 509 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI------ 670
FRD G V + D+ R+ +A E+S L +P+ GY L + + ER
Sbjct: 195 FRDM-GHHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVSCL 253
Query: 671 -TTTKKGSITSVQAI 712
++GS+T V A+
Sbjct: 254 GNPQREGSVTIVGAV 268
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 533 VLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI--TTTKKGSITSV 703
VL+ + ++ + +A EVSA +P G+ + TD+ T+ ER + GSIT +
Sbjct: 211 VLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATVYERAGRVEGRNGSITQI 269
>SB_41051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 453 EPPGARAR-VALTGLTVAEYSVIKKDRMYCSSLTTF 557
EPPGA R V TG+TVA+ + MYC +
Sbjct: 204 EPPGAYRRDVTYTGVTVAQLKTLTGSSMYCEQFLKY 239
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 30.7 bits (66), Expect = 1.5
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Frame = -3
Query: 400 ITPDSIISWYKSFPSRVRSPTPANTE*--PPWALATLLISSIINTVLPTPLAKQPNLSSF 227
+TP S++S + S PS + + + ++ +L L SS +L L +LS F
Sbjct: 953 LTPSSLLSDFLSSPSDFLTSSSSLSDFLTSSSSLRVFLTSSSSRGLLSDFLTSSSSLSDF 1012
Query: 226 GIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTTLVNRFADYIDDAT 59
S + DF TS +L + S + SSSL+ D + + +D++ ++
Sbjct: 1013 LTSSSSLSDFLTSSSSLRVFLTSSSSLSDFLTSSSLL-SDFISSSSSLSDFLTSSS 1067
Score = 29.1 bits (62), Expect = 4.5
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = -3
Query: 400 ITPDSIISWYKSFPSRVRSPTPANTE*PPWALATLLISSIINTVLPTP-LAKQPNLSSFG 224
+T S++S + S PS + + + ++ L +L + ++ LP+ L +LS F
Sbjct: 688 LTSSSLLSDFLSLPSDFLTSSSSLSD----FLTSLPSDFLTSSSLPSDFLTSSSSLSDFL 743
Query: 223 IRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTTLVNRFADYI 71
S + DF TS +L + L S + SSSL D T + +D++
Sbjct: 744 TSSSSLSDFLTSSSSLSVFYTSSSLPSDFLTSSSL-PSDFLTSSSSLSDFL 793
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -1
Query: 84 SPITLMMRPRV-SAPTGIRIGEPESSTG 4
S +T +P SAPTGI G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139
>SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)
Length = 231
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 208 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTTL-VNRFAD--YIDDATEGFSSH 41
+DD Y Y + L+ +VD L+ V G L V+ + D Y+D +GF SH
Sbjct: 168 VDDLYNGYVDDLIDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDGFQSH 226
>SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)
Length = 925
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +3
Query: 660 RKELPPPRKVPSHLYRLFMYQLMT*QICSSYHFCYLGCYHCTLPE 794
R+E P +P H Y Y + Q H+ Y C ++P+
Sbjct: 334 RREQSPAGNIPMHEYEYVQYPALARQNAPQTHYDYADCNAISVPQ 378
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 24.6 bits (51), Expect(2) = 5.0
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3
Query: 750 YHFCYLGCYHC 782
Y++CY CY+C
Sbjct: 489 YYYCYCYCYYC 499
Score = 22.6 bits (46), Expect(2) = 5.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +3
Query: 741 CSSYHFCYLGCY 776
C Y++CY CY
Sbjct: 482 CYCYYYCYYYCY 493
>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1151
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 SGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES-GVISLKDKTSKV 428
SGVGKT L E+ + K++ G+ + TRE + +++E G++S S++
Sbjct: 128 SGVGKTTLAQEVAKSFCKSNEGFELKRVDLRETREFKIVVSQLLECFGLVSWDRDVSRL 186
>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 20 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 115
G PI P+G +GR I IG PI GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312
>SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -3
Query: 250 KQPNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTTLVNRF 83
+QP L G D + YE+LL RH DKL + N S + GD RF
Sbjct: 50 QQPMLLEIGAPINIFGDIHGQYEDLL--RHFDKL-GYPPNESYIFLGDYVDRPKRF 102
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 255 SGVGKTVLIMELINNVAKAHGGYSV---FAGVGERTREGNDLYHEMIE 389
SGVGKT +I + + + H G+ V F G+ G +L + E
Sbjct: 654 SGVGKTTVIAKAARELQERHSGWVVLFRFCGITPTCSTGRELTQSLCE 701
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,983,028
Number of Sequences: 59808
Number of extensions: 510118
Number of successful extensions: 1664
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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