Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0862
(816 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 153 2e-37
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 153 2e-37
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 153 2e-37
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 56 3e-08
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 49 3e-06
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 49 3e-06
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 49 3e-06
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 49 3e-06
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 49 3e-06
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 34 0.098
At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) / 1,4-alp... 31 0.91
At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming] beta-... 31 1.2
At4g34340.1 68417.m04880 expressed protein 29 3.7
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 29 4.9
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 29 4.9
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 28 6.4
At2g23450.2 68415.m02800 protein kinase family protein contains ... 28 6.4
At2g23450.1 68415.m02799 protein kinase family protein contains ... 28 6.4
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00... 28 8.5
At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR ... 28 8.5
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 153 bits (370), Expect = 2e-37
Identities = 80/106 (75%), Positives = 86/106 (81%), Gaps = 5/106 (4%)
Frame = +3
Query: 207 ICSLLMPKEE--RLGCLA-SGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 377
+ LL P + ++G +GVGKTVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY
Sbjct: 214 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYR 273
Query: 378 EMIESGVISL--KDKTSKVALVYGQMNEPPGARARVALTGLTVAEY 509
EMIESGVI L K SK ALVYGQMNEPPGARARV LTGLTVAEY
Sbjct: 274 EMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEY 319
Score = 136 bits (328), Expect = 2e-32
Identities = 71/102 (69%), Positives = 75/102 (73%)
Frame = +2
Query: 509 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKG 688
FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLA+D+G +QERITTTKKG
Sbjct: 320 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKKG 379
Query: 689 SITSVQAIYVXXXXXXXXXXXXXXXXXXXXXYSSRAIAELGI 814
SITSVQAIYV SR I+ELGI
Sbjct: 380 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGI 421
Score = 116 bits (280), Expect = 1e-26
Identities = 54/82 (65%), Positives = 65/82 (79%)
Frame = +2
Query: 8 VLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILV 187
VL++G+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ EIL
Sbjct: 150 VLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILA 209
Query: 188 TGIKVVDLLAPYAKGGKIGLFG 253
TGIKVVDLLAPY +GGKIGLFG
Sbjct: 210 TGIKVVDLLAPYQRGGKIGLFG 231
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 153 bits (370), Expect = 2e-37
Identities = 80/106 (75%), Positives = 86/106 (81%), Gaps = 5/106 (4%)
Frame = +3
Query: 207 ICSLLMPKEE--RLGCLA-SGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 377
+ LL P + ++G +GVGKTVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY
Sbjct: 217 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYR 276
Query: 378 EMIESGVISL--KDKTSKVALVYGQMNEPPGARARVALTGLTVAEY 509
EMIESGVI L K SK ALVYGQMNEPPGARARV LTGLTVAEY
Sbjct: 277 EMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEY 322
Score = 136 bits (328), Expect = 2e-32
Identities = 71/102 (69%), Positives = 75/102 (73%)
Frame = +2
Query: 509 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKG 688
FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLA+D+G +QERITTTKKG
Sbjct: 323 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKKG 382
Query: 689 SITSVQAIYVXXXXXXXXXXXXXXXXXXXXXYSSRAIAELGI 814
SITSVQAIYV SR I+ELGI
Sbjct: 383 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGI 424
Score = 116 bits (280), Expect = 1e-26
Identities = 54/82 (65%), Positives = 65/82 (79%)
Frame = +2
Query: 8 VLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILV 187
VL++G+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ EIL
Sbjct: 153 VLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILA 212
Query: 188 TGIKVVDLLAPYAKGGKIGLFG 253
TGIKVVDLLAPY +GGKIGLFG
Sbjct: 213 TGIKVVDLLAPYQRGGKIGLFG 234
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 153 bits (370), Expect = 2e-37
Identities = 80/106 (75%), Positives = 86/106 (81%), Gaps = 5/106 (4%)
Frame = +3
Query: 207 ICSLLMPKEE--RLGCLA-SGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 377
+ LL P + ++G +GVGKTVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY
Sbjct: 214 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYR 273
Query: 378 EMIESGVISL--KDKTSKVALVYGQMNEPPGARARVALTGLTVAEY 509
EMIESGVI L K SK ALVYGQMNEPPGARARV LTGLTVAEY
Sbjct: 274 EMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEY 319
Score = 136 bits (328), Expect = 2e-32
Identities = 71/102 (69%), Positives = 75/102 (73%)
Frame = +2
Query: 509 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKG 688
FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLA+D+G +QERITTTKKG
Sbjct: 320 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKKG 379
Query: 689 SITSVQAIYVXXXXXXXXXXXXXXXXXXXXXYSSRAIAELGI 814
SITSVQAIYV SR I+ELGI
Sbjct: 380 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGI 421
Score = 116 bits (280), Expect = 1e-26
Identities = 54/82 (65%), Positives = 65/82 (79%)
Frame = +2
Query: 8 VLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILV 187
VL++G+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ EIL
Sbjct: 150 VLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILA 209
Query: 188 TGIKVVDLLAPYAKGGKIGLFG 253
TGIKVVDLLAPY +GGKIGLFG
Sbjct: 210 TGIKVVDLLAPYQRGGKIGLFG 231
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/80 (31%), Positives = 44/80 (55%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILVTGI 196
+GS + +P G LGR+++ +G PID +G + + + +AP ++ E + TG+
Sbjct: 363 TGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGL 422
Query: 197 KVVDLLAPYAKGGKIGLFGE 256
K VD L P +G + L G+
Sbjct: 423 KAVDSLVPIGRGQRELLIGD 442
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILVTGI 196
+G ++ PV + LGRI N G+PID PI + I + + + E++ TGI
Sbjct: 88 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 147
Query: 197 KVVDLLAPYAKGGKIGLF 250
+D++ A+G KI LF
Sbjct: 148 STIDVMNSIARGQKIPLF 165
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 524 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI--TTTKKGSIT 697
G+ VL+ + ++ + A EVSA +P GY + TD+ T+ ER +KGSIT
Sbjct: 267 GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSIT 326
Query: 698 SV 703
+
Sbjct: 327 QI 328
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILVTGI 196
+G ++ PV + LGRI N G+PID PI + I + + + E++ TGI
Sbjct: 88 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 147
Query: 197 KVVDLLAPYAKGGKIGLF 250
+D++ A+G KI LF
Sbjct: 148 STIDVMNSIARGQKIPLF 165
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 524 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI--TTTKKGSIT 697
G+ VL+ + ++ + A EVSA +P GY + TD+ T+ ER +KGSIT
Sbjct: 267 GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSIT 326
Query: 698 SV 703
+
Sbjct: 327 QI 328
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILVTGI 196
+G ++ PV + LGRI N G+PID PI + I + + + E++ TGI
Sbjct: 87 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 146
Query: 197 KVVDLLAPYAKGGKIGLF 250
+D++ A+G KI LF
Sbjct: 147 STIDVMNSIARGQKIPLF 164
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 524 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI--TTTKKGSIT 697
G+ VL+ + ++ + A EVSA +P GY + TD+ T+ ER +KGSIT
Sbjct: 266 GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSIT 325
Query: 698 SV 703
+
Sbjct: 326 QI 327
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILVTGI 196
+G ++ PV + LGRI N G+PID PI + I + + + E++ TGI
Sbjct: 87 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 146
Query: 197 KVVDLLAPYAKGGKIGLF 250
+D++ A+G KI LF
Sbjct: 147 STIDVMNSIARGQKIPLF 164
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 17 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQXEILVTGI 196
+G ++ PV + LGRI N G+PID PI + I + + + E++ TGI
Sbjct: 87 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 146
Query: 197 KVVDLLAPYAKGGKIGLF 250
+D++ A+G KI LF
Sbjct: 147 STIDVMNSIARGQKIPLF 164
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 34.3 bits (75), Expect = 0.098
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +2
Query: 509 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 682
FRD G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 340 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL 398
Query: 683 -----KGSITSVQAI 712
GS+T V A+
Sbjct: 399 GGPERNGSVTIVGAV 413
Score = 31.1 bits (67), Expect = 0.91
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +3
Query: 252 ASGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISL-------K 410
A G GKTV+ L ++ V+ G GER GN++ +++ +++ +
Sbjct: 253 AFGCGKTVISQALSKY---SNSDAVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREE 306
Query: 411 DKTSKVALVYGQMNEPPGARARVALTGLTVAEY 509
+ LV N P AR TG+T+AEY
Sbjct: 307 SVMKRTTLVANTSNMPVAAREASIYTGITIAEY 339
>At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) /
1,4-alpha-D-glucan maltohydrolase, putative almost
identical to beta-amylase BMY3 GI:15149457 from
[Arabidopsis thaliana]; identical to cDNA putative
beta-amylase BMY3 (BMY3) GI:15149456
Length = 536
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -3
Query: 250 KQPNLSSF----GIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 113
+QPN SSF G Q DF+ S+ + LL H D++ S + ++ S +G
Sbjct: 309 QQPNSSSFFSDGGSWESQYGDFFLSWYSSLLTSHADRVLSVASSAFSGIG 358
>At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial, putative / succinyl-CoA
synthetase, beta chain, putative / SCS-beta, putative
identical to SP|O82662 Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, beta chain) (SCS- beta)
{Arabidopsis thaliana}; similar to SP|O97580
Succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (EC 6.2.1.5) {Sus scrofa};
contains Pfam profiles PF00549: CoA-ligase, PF02222:
ATP-grasp domain
Length = 421
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 240 LGCLASGVGKTVLIMELINNVAKAHGGYSV-FAGVGERTREGNDLYHEMIESGVISLKDK 416
+GC+ +G G + M++I K HGG F VG GN H+++E+ I D
Sbjct: 293 IGCMVNGAGLAMATMDII----KLHGGTPANFLDVG-----GNASEHQVVEAFKILTSDD 343
Query: 417 TSKVALV 437
K LV
Sbjct: 344 KVKAILV 350
>At4g34340.1 68417.m04880 expressed protein
Length = 353
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 109 DGTTLVNRFADYIDDATEGFSSHRDTNW 26
DG +++ FA ++ A +GFSS T W
Sbjct: 259 DGLSVIEAFAPAMEAARDGFSSEAHTEW 286
>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
very low similarity to SP|Q40863 Late embryogenesis
abundant protein EMB8 from Picea glauca; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 1805
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 339 VGERTREGNDLYHEMIESGVISLKDKTSKVALV 437
V + T++ N EM+ESG+ S+ +K++ V V
Sbjct: 1368 VSKETKQNNSSIGEMVESGLQSINNKSAMVGAV 1400
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 399 ISLKDKTSKVALVYGQMNEPPGARARV 479
I+L+ + K+A+ +G +N PPG RV
Sbjct: 530 ITLRYHSEKLAITFGLLNTPPGTTIRV 556
>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 378 RGINHFLHEYALLLQQTQSNHHGL 307
R +NH LH++ L+L + NH+ L
Sbjct: 465 RKLNHALHKHTLILDTSPQNHYDL 488
>At2g23450.2 68415.m02800 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 708
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 182 LVTGIKVVDLLAPYAKGGKIGLFGEWCGQNCID 280
++TG+KVVD P+ + L + G CID
Sbjct: 541 IITGLKVVDFTRPHTEINLAALAVDKIGSGCID 573
>At2g23450.1 68415.m02799 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 708
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 182 LVTGIKVVDLLAPYAKGGKIGLFGEWCGQNCID 280
++TG+KVVD P+ + L + G CID
Sbjct: 541 IITGLKVVDFTRPHTEINLAALAVDKIGSGCID 573
>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
F-box domain
Length = 338
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 408 LEKSHQIQSSRGINHFLHEYALLLQQTQSNHHGLWQHC*SVP*SIQF 268
L+ SH I LH LLL T+ N H +W C IQF
Sbjct: 79 LKDSHSNSEQVDIVQVLHCDGLLLCTTKDNRHVVWNPCLGETHWIQF 125
>At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 258 GVGKTVLIMELINNVAKAHGGYSV 329
GVGKT L+ ++ N +K GG+ V
Sbjct: 186 GVGKTTLLTQINNKFSKLGGGFDV 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,672,588
Number of Sequences: 28952
Number of extensions: 366567
Number of successful extensions: 1070
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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