Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0861
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.3  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.9  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   9.1  

>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 291 HKAIKKTSSSN*NYFFVNTKLNNFITTLRFLTLNLPIVLVYVFL 422
           H  +  ++ SN   F  +  L +    LRF    LP+  VY FL
Sbjct: 234 HLGMDSSTVSNLKRFCFSESLGHIFAPLRFQNQQLPLQHVYAFL 277


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +3

Query: 339 VNTKLNNFITTLRFL----TLNLPIVLVYVFLPTAFSNFDPKFIKRSILL--FNK 485
           V TK  N  +TL F     TL  P+  +     +  SN DP  +KR ILL  FNK
Sbjct: 8   VFTKPQNHSSTLEFYDFVTTLLEPLSRIGKTRKSKTSNLDPYELKRKILLDYFNK 62


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
 Frame = -1

Query: 481 LNNKIDRFMNFGSKLLNAVGR---NTYTRTIGRFSVKKRKVVIKLFNFVFTKK*F*LDEE 311
           L N +D F NF S      G    + Y       S  KRK   K+   +F+   F + + 
Sbjct: 199 LENFMDLFDNFYSDKEKTKGAWVVSFYAIMALAVSRSKRKDKEKISKSLFSTSWFLVQKP 258

Query: 310 VFFIALWGDELTAYLVLSGTAAHRHLQRKC 221
            FF+    D++ A  ++    AH  L   C
Sbjct: 259 GFFLTARLDKIQALTIMIQFCAHLSLYNLC 288


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 112 PCLFLPSSSNAFRFEGWGSRCTVKTET*NSCLKVGGSIYVVDVYGLR 252
           P  F+  +   F    W S   V+ E+  SCL +   + V +V G++
Sbjct: 324 PITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLLPVEEVEGMK 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,600
Number of Sequences: 5004
Number of extensions: 48245
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)