Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0861
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z50029-7|CAA90343.3|  447|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF387606-1|AAK70489.1|  447|Caenorhabditis elegans putative chem...    27   8.4  

>Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical
           protein F28B1.5 protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 81  DSQDVLPTVFYNTTSCTRRPSCA 13
           D+    P+VFY++  CT RP C+
Sbjct: 345 DAVSKRPSVFYDSIKCTMRPICS 367


>Z50029-7|CAA90343.3|  447|Caenorhabditis elegans Hypothetical
           protein ZC504.5 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 409 TRTIGRFSVKKRKVVIKLFNFVFT 338
           T T G F +  RK++I LF+ +FT
Sbjct: 393 TLTAGNFFMMNRKIMISLFSAIFT 416


>AF387606-1|AAK70489.1|  447|Caenorhabditis elegans putative
           chemoreceptor GUR-3 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 409 TRTIGRFSVKKRKVVIKLFNFVFT 338
           T T G F +  RK++I LF+ +FT
Sbjct: 393 TLTAGNFFMMNRKIMISLFSAIFT 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,323
Number of Sequences: 27780
Number of extensions: 275793
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)