Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0861
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.81 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 67  DVL*VRADRSAVGPPPCL--FLPSSSNAF-RFEGWGSRCTVKTET*NSCL--KVGGSIYV 231
           D++ VRAD SAVG  P L   LP+ +  F  F     R  V  +   SCL     GS++ 
Sbjct: 34  DIIWVRADGSAVGDVPGLRQVLPNGNLVFPPFRAEDYRQEVHAQV-YSCLARSPAGSVHS 92

Query: 232 VDV 240
            DV
Sbjct: 93  RDV 95


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 327 NYFFVNTKLNNFITTLRFLTLNLPIVLVYVFLPTAFSNFDPK 452
           NY   N   NN+   L +  +N+  + V V +P    NF P+
Sbjct: 97  NYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFPPR 138


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 327 NYFFVNTKLNNFITTLRFLTLNLPIVLVYVFLPTAFSNFDPK 452
           NY   N   NN+   L +  +N+  + V V +P    NF P+
Sbjct: 97  NYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFPPR 138


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 423 PTAFSNFDPKFIKRSILLFNKD 488
           PT FSN  PKF  R+I  +N +
Sbjct: 357 PTLFSNVTPKF-PRNIDEYNNN 377


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 318 MRKFFLLPCGGTSSRPT 268
           +++FF LP G T++ PT
Sbjct: 259 VKRFFGLPVGVTAAIPT 275


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 318 MRKFFLLPCGGTSSRPT 268
           +++FF LP G T++ PT
Sbjct: 259 VKRFFGLPVGVTAAIPT 275


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 318 MRKFFLLPCGGTSSRPT 268
           +++FF LP G T++ PT
Sbjct: 259 VKRFFGLPVGVTAAIPT 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,405
Number of Sequences: 438
Number of extensions: 3720
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)