Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0860
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    64   2e-11
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    30   0.27 
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.81 
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    28   1.4  
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu...    27   1.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.5  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   4.3  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
 Frame = +3

Query: 276 DEKYDATIDTQEEHEMLQ------KLAAAKEDQQFPDEVDTPQDIPARERFMRYRGLESF 437
           D K +  +D  EE E+ Q      K    +E+ +FPDEV+   +  ARERF +YRGL S 
Sbjct: 440 DAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEVELQPNELARERFKKYRGLRSL 499

Query: 438 RTSAWDVKE---NLPQDYSRIFQFEN 506
            TS WD  E   N P+++ ++F+FEN
Sbjct: 500 YTSQWDADEYDPNEPREWRQLFKFEN 525



 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 73  KKVPKGWSDYQAAWI 117
           K+VPKG S YQA WI
Sbjct: 379 KRVPKGTSTYQATWI 393


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 518 RKRVFKELEDSLVNMYGFYIRIHVKGVHQ-DLWKAFSTANPNAPF 649
           +K+  K LE+ L+N YG ++    KG    ++WK + TA   + F
Sbjct: 90  KKQSSKGLEEKLINSYGTHVESLNKGRRLIEIWKYYETAPGQSSF 134


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 243 NIIELFIVLWIRIIIFTRHKLIVFFLISTIRLITIFL 133
           NI+ L IVL+  ++I  +   I   L  T+ +I+ FL
Sbjct: 63  NILTLIIVLYFSLVIVNKTTSIALALFKTLAVISFFL 99


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 533  KELEDSLVNMYGFYIRIHVKGVHQDLWKAFSTANPNAPFGCF 658
            K L DS+   +  YI+    G+  + WKA++  + N P G F
Sbjct: 938  KPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIF 979


>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
           Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 241

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 205 YHLHKT*THRFLSHLHYQTHHH 140
           Y+  K   HRFL +LH+Q  H+
Sbjct: 94  YYADKGGEHRFLHYLHFQQEHY 115


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 240  IIELFIVLWIRIIIFTRHKLI 178
            +I +FIV WI  I  T H+LI
Sbjct: 1421 VISIFIVFWISFIPLTVHELI 1441


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 578 RIHVKGVHQDLWKAFSTANPNAPFG 652
           R+ V+G  +  W  F + NP AP G
Sbjct: 286 RVPVEGTDEYKWVLFISINPGAPLG 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,594
Number of Sequences: 5004
Number of extensions: 54036
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)