Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0860
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48643| Best HMM Match : DUF663 (HMM E-Value=0) 109 2e-24
SB_48645| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.17) 38 0.010
SB_25963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 3.4
SB_56132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 29 4.5
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092) 28 6.0
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5) 28 6.0
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 28 7.9
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 28 7.9
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)
Length = 450
Score = 109 bits (263), Expect = 2e-24
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +3
Query: 282 KYDATIDTQEEHEMLQKLAAAKEDQQFPDEVDTPQDIPARERFMRYRGLESFRTSAWDVK 461
KYD +D EE L+KL AA+E++ FPDE+DTP D AR RF ++RGL+SFRTS WD K
Sbjct: 145 KYDDRVDVDEERLQLEKLRAARENEMFPDELDTPLDTAARVRFQKFRGLKSFRTSPWDPK 204
Query: 462 ENLPQDYSRIFQFEN 506
ENLP DY+RIFQFEN
Sbjct: 205 ENLPSDYARIFQFEN 219
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 512 RTRKRVFKELEDSLVNMYGFYIRIHVKGVHQDLWKAFSTANPNAPFG 652
RT+KRV ED+ M G ++ +H+ V + +F ++ P FG
Sbjct: 222 RTKKRVLSAEEDTEGAMPGCFVTVHIVNVPKAFIDSFDSSKPLVVFG 268
>SB_48645| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.17)
Length = 373
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = +1
Query: 22 TEEEIEQANLETQKKKIKKVPKGWSDYQAAWIV 120
++E+I + +T K+K K+VPKG S+YQA+WI+
Sbjct: 295 SDEQIATQSSDT-KQKSKRVPKGTSEYQASWII 326
>SB_25963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 261 LIRNRFNIIELFIVLWIRIIIFTRHKLIVFFLISTIRLITIFLGIRFDNPS--SLVIRPT 88
+I N II + I + I III T I+F +I + I I + I + S S + P
Sbjct: 123 IITNTITII-ISITIIITIIIITNTITIIFIIIIITKAIIIIIVISAPSTSHASFPLLPQ 181
Query: 87 FGYFLDFFLLCL*ISLFNFFFS 22
DFFLL SL+ ++ S
Sbjct: 182 -SPPADFFLLSTLSSLYRYYAS 202
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 196 EDDNSDPEDDKQFNDIESVTNQRL 267
E+DNS P+DDK N +E+ TN+ +
Sbjct: 173 EEDNSSPKDDKS-NQMETSTNEEV 195
>SB_56132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 196 EDDNSDPEDDKQF-NDIESVTNQRLDPQMRSMMPQ 297
+DD+ D EDD + N+++ +TN + + MPQ
Sbjct: 53 DDDDDDDEDDNNYHNELDRLTNAKGSKYITMNMPQ 87
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 205 YHLHKT*THRFLSHLHYQTHHHLPRH 128
YH K HR+ H H+Q +HH H
Sbjct: 35 YHKLKNPRHRYHHHHHHQHNHHQHHH 60
>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
Length = 341
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 ESEVGPTDE-KYDATIDTQEEHEMLQKLAAAKEDQQFPDEVDTPQDIP 395
E+ +G DE + + + + + E ++ AAA+ED + D+ DTP P
Sbjct: 230 EAILGDVDEGQNEKSAPGESKEENAEQPAAAQEDDEDDDDDDTPAKAP 277
>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 214 DQNYHLHKT*THRFLSHLHYQTHHHLPRH 128
D ++H H+ H+ H H+ HHH H
Sbjct: 15 DHHHHDHQHHDHQHHDHQHHDHHHHDHHH 43
>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
Length = 325
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 232 TVYRPLDQNYHLHKT*THRFLSHLHYQTHHHLPRHQ 125
T+ P +YH H H L Y+ HHH R+Q
Sbjct: 288 TLATPCHYHYHHHHPPYHYHYPPLPYRHHHHHNRYQ 323
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 229 VYRPLDQNYHLHKT*THRFLSHLHYQTHHHLPRH 128
+YR Q++ H H+ H H+ HHH H
Sbjct: 206 IYRRHHQHHQHHHHHHHQHNHHHHHHNHHHHHHH 239
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 246 ICYESEVGPTDEKYDATIDTQEEHEML--QKLAAAKEDQQFPDEVDTPQD 389
+ ES+ G DE+ D +D +E EM+ + A K D++ +E D ++
Sbjct: 1788 VLIESDDGEDDEEVDEEMDDEEGEEMMEDEDEEADKGDEEEEEEGDVEEE 1837
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/36 (25%), Positives = 24/36 (66%)
Frame = -1
Query: 246 FNIIELFIVLWIRIIIFTRHKLIVFFLISTIRLITI 139
F+++ F++ +R+I+ ++V FL+S +R++ +
Sbjct: 161 FSVVVAFLLCPLRVIVLPCFSVVVAFLLSPLRVLVL 196
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/36 (25%), Positives = 24/36 (66%)
Frame = -1
Query: 246 FNIIELFIVLWIRIIIFTRHKLIVFFLISTIRLITI 139
F+++ F++ +R+I+ ++V FL+S +R++ +
Sbjct: 199 FSVVVAFLLCPLRVIVLPCFSVVVAFLLSPLRVLVL 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,592,213
Number of Sequences: 59808
Number of extensions: 394826
Number of successful extensions: 1740
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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