Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0860
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.29 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 157 YQTHHHLPRHQI 122
           YQ+HHHL  HQ+
Sbjct: 70  YQSHHHLHHHQV 81


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 160 HYQTHHHLPRHQIRQSKQLGNQ 95
           HY  +H+  RH  +   Q  NQ
Sbjct: 424 HYNHNHNQARHSSKSDNQNNNQ 445


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 142 HLPRHQIRQSKQLGNQT 92
           H P HQI+ S   G QT
Sbjct: 917 HFPHHQIQVSTSAGLQT 933


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -3

Query: 208 NYHLHKT*THRFLSHLHYQTHHHLPRH 128
           N+H+H    H  L H  +    H  R+
Sbjct: 278 NHHVHHANHHAILGHSGFLCERHQKRY 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,579
Number of Sequences: 438
Number of extensions: 3742
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)