Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0860
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,... 92 3e-19
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 33 0.17
At1g24420.1 68414.m03077 transferase family protein similar to d... 32 0.30
At5g14260.3 68418.m01668 SET domain-containing protein low simil... 29 3.8
At5g14260.2 68418.m01667 SET domain-containing protein low simil... 29 3.8
At5g14260.1 68418.m01666 SET domain-containing protein low simil... 29 3.8
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 29 3.8
At1g01650.1 68414.m00083 protease-associated (PA) domain-contain... 29 3.8
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ... 28 5.0
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 28 6.6
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 28 6.6
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi... 27 8.7
>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 793
Score = 92.3 bits (219), Expect = 3e-19
Identities = 39/74 (52%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Frame = +3
Query: 288 DATIDTQEEHEMLQKLAAA-KEDQQFPDEVDTPQDIPARERFMRYRGLESFRTSAWDVKE 464
D + ++ + ++K+ A +D++FPDEV+TP D+PAR RF +YRGL+SFRTS+WD E
Sbjct: 456 DEDLTEEQIKDEIKKIKEAYADDEEFPDEVETPIDVPARRRFAKYRGLKSFRTSSWDPNE 515
Query: 465 NLPQDYSRIFQFEN 506
+LPQDY+RIF F+N
Sbjct: 516 SLPQDYARIFAFDN 529
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/40 (55%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
Frame = +1
Query: 7 EQTWPTEEEIEQANLETQKKKIKK--VPKGWSDYQAAWIV 120
EQTWPTEEE+ +A+ ++ ++KK +P+G S+YQAAWIV
Sbjct: 356 EQTWPTEEEMAEADKNQKQGRLKKKTLPRGTSEYQAAWIV 395
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +3
Query: 255 ESEVGPTD--EKYDATIDTQEE-HEMLQKLAAAKEDQQFPDEVDTPQDIPA---RERFMR 416
+ EVG + E+ T+ +EE + K + KE + D V+ P D+ + R +
Sbjct: 1798 KGEVGLANILERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIE 1857
Query: 417 YRGLESFRTSAWDVKEN 467
YR E FR W +K N
Sbjct: 1858 YRNREQFRHDVWQIKYN 1874
>At1g24420.1 68414.m03077 transferase family protein similar to
deacetylvindoline 4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034],
acetyl-CoA:benzylalcohol acetyltranferase [Clarkia
concinna][GI:6166330][PMID:10588064]
Length = 436
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 98 ITKLLGLSNLMPRKMVMSLIVEMRKKTMSLC 190
+TK+ LS+L PR V+ ++V +R K SLC
Sbjct: 257 VTKVSRLSSLTPRTSVLQILVNLRGKVDSLC 287
>At5g14260.3 68418.m01668 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 107 LLGLSNLMPRKMVMSLIVEMRKKTMSLCLVKMIILIQR 220
LL +L PRK V + +V++ KK + CL + L+ +
Sbjct: 459 LLADPSLSPRKRVATRLVQLEKKILVACLTTTVDLLNQ 496
>At5g14260.2 68418.m01667 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 107 LLGLSNLMPRKMVMSLIVEMRKKTMSLCLVKMIILIQR 220
LL +L PRK V + +V++ KK + CL + L+ +
Sbjct: 459 LLADPSLSPRKRVATRLVQLEKKILVACLTTTVDLLNQ 496
>At5g14260.1 68418.m01666 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 107 LLGLSNLMPRKMVMSLIVEMRKKTMSLCLVKMIILIQR 220
LL +L PRK V + +V++ KK + CL + L+ +
Sbjct: 459 LLADPSLSPRKRVATRLVQLEKKILVACLTTTVDLLNQ 496
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 270 PTDEKYDATIDTQEEHEMLQKLAAAKEDQQFPDEVDTPQDIPARE 404
P EK TID +E ++ +++Q EV T QD+ E
Sbjct: 101 PLIEKVQETIDAEESDNKMEDNGKPEDNQLVTPEVVTSQDVSVEE 145
>At1g01650.1 68414.m00083 protease-associated (PA) domain-containing
protein contains protease associated (PA) domain,
Pfam:PF02225
Length = 491
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +3
Query: 252 YESEVGPTDEKYDATIDTQEEHEMLQKLAAAKEDQQFPDEVDTPQDIPARERFMRYRGLE 431
Y VG ++ T++++E+H L KLA A PD TP++ E + +RG
Sbjct: 68 YTEYVG-VGARFGPTLESKEKHATLIKLAIADP----PDCCSTPKNKLTGEVILVHRGKC 122
Query: 432 SFRT 443
SF T
Sbjct: 123 SFTT 126
>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9Y4I5 Tesmin
(Metallothionein-like 5, testis-specific) {Homo
sapiens}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 408
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 515 TRKRVFKELEDSLVNMYGF-YIRIHVKGVHQD 607
+RKR K++ DS+V+ YG Y R++ KG D
Sbjct: 221 SRKRKSKDISDSVVSSYGVQYQRVNNKGRKND 252
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 23 LKKKLNKLI*RHKRKKSRKYPKVGLITKLLGLSNLMPRKMVMSL 154
LKK +K+I + KK+ K +V KL+ +LMP + + +
Sbjct: 46 LKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDV 89
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 23 LKKKLNKLI*RHKRKKSRKYPKVGLITKLLGLSNLMPRKMVMSL 154
LKK +K+I + KK+ K +V KL+ +LMP + + +
Sbjct: 46 LKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDV 89
>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 798
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 488 SRIILRQIFLYIPC*CPERL*SSVSHKTLSSWDILRGINFIRELLIFFCSC 336
SR ++ Q ++P CP L S + + WD I F+ E F C C
Sbjct: 500 SRGLIMQTTEFVPTGCPLEL--SYGPE-VGKWDCKNRIRFLEEEYFFHCRC 547
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,842,891
Number of Sequences: 28952
Number of extensions: 274940
Number of successful extensions: 934
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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