Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0858
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   4.0  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   9.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.2  

>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -1

Query: 586 SGSSNTHCSRCLTFLVTEWPSICXSFYLKHA-PPD----VCGRQNISVLNQLA 443
           SG +   CS C   ++ EW      F L+    PD    +CG + +  L ++A
Sbjct: 582 SGMAYPQCSACSECIINEWNREKWMFVLRAINEPDYVEELCGLREVQALGEIA 634


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 161 SEDSQEIVDIDPMXLRHKLLSLKSTTQKMDVS 256
           SE+ +E+ ++DP+   HK + +       DV+
Sbjct: 362 SEEDEELWELDPVEFIHKYIDIYDDFNSADVA 393


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 221 SLKSTTQKMDVSDXLSHHICKIGTVVKNLQKKKKQESRRLLTWVLPFLTTCVK 379
           +LK+   K+DV    S  IC+  + +  L  KK +  ++L  +   +L+ C K
Sbjct: 255 NLKAYFDKLDVGSIDSLSICRNYSYMDILLSKKSKYVKKLEKYWSIYLSNCKK 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,004
Number of Sequences: 5004
Number of extensions: 45795
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)