Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0858
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    29   4.1  
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284...    29   4.1  
12_01_0231 + 1744323-1745276,1745516-1746193                           28   5.4  
11_01_0234 + 1804581-1805357,1805941-1806447                           28   5.4  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 179 IVDIDPMXLRHKLLSLKSTTQKMDVSDXLSHHICKIGTVVKNLQKKKKQESRR 337
           +++ DP  + H+ LSL+S+    D++  L+H + + G    N      QESR+
Sbjct: 380 VLNKDPTLVFHEKLSLESSLGATDLNGKLTHEVSQDGP--PNKLTSSGQESRK 430


>02_01_0391 +
           2838471-2838794,2838892-2839028,2841155-2841631,
           2841719-2841999,2843009-2843051,2844094-2844148,
           2845771-2845824,2846282-2846314,2846574-2846621,
           2846885-2846950,2847286-2847426
          Length = 552

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = -3

Query: 479 WASEYFCSEPTGKGPTQESSSELXYLMTPLVANTLRMSSGMEGPMLVDVWIP-------V 321
           WAS    S  TG GP   S+ EL   +T   AN L     + G     +WIP       V
Sbjct: 144 WASTN-TSSTTGFGPCFTSAGELIDALTYARANPLMRKVKIMGREDKIIWIPNDNLRRLV 202

Query: 320 FSFSEDFLLLYRSCKC 273
            S ++ + LL+   KC
Sbjct: 203 RSLNKTYALLHAKKKC 218


>12_01_0231 + 1744323-1745276,1745516-1746193
          Length = 543

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -1

Query: 568 HCSRCLTFLVTEWPSICXSFYLKHAPPDVCGRQNISVLNQ 449
           HC R       E P IC  +    APPD   RQ  +   Q
Sbjct: 476 HCCRQQAVAGDEEPVICRMYVSPRAPPDSAARQESAAFVQ 515


>11_01_0234 + 1804581-1805357,1805941-1806447
          Length = 427

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -1

Query: 568 HCSRCLTFLVTEWPSICXSFYLKHAPPDVCGRQNISVLNQ 449
           HC R       E P IC  +    APPD   RQ  +   Q
Sbjct: 360 HCCRQQAVAGDEEPVICRMYVSPRAPPDSAARQESAAFVQ 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,810
Number of Sequences: 37544
Number of extensions: 290763
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)