Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0858
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21036| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)                   29   3.2  
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 28   5.6  
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)                 27   9.7  

>SB_21036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -3

Query: 467 YFCSEPTGKGPTQESSSELXYLMTPLVANTLRMSSGMEGPMLVDVWIPVFSFSED 303
           YF S PTG  PT  + S    L+TPL A++  MSS         +W    +F  D
Sbjct: 163 YFLSLPTGM-PTVSAHSSYPGLLTPLSASSNYMSSPQLPVHNAPLWTCQTAFQSD 216


>SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/81 (20%), Positives = 31/81 (38%)
 Frame = +1

Query: 46  IQNKIQTEEHTHLAGSCH*GDFYSEKY*KREQXXXXXXXXXXXXXXGH*SNGFKTQIAFT 225
           +QN  +  E +H+   C  G F S K+   E               G+  + F    +F 
Sbjct: 476 VQNHPEAREFSHMYRLCSNGSFSSAKWLLAEMNVIRPTISGTINFHGNEHSRFLKHFSFF 535

Query: 226 QKYNTENGCVGPXLPPHLQDR 288
            ++ T + C     P ++ +R
Sbjct: 536 YEHTTHSNCTSGYCPANVVER 556


>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
          Length = 1337

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 152 EIFSEDSQEIVDIDPMXLRHKLLSLKSTTQKMDVSDXLSHHICKIGTVVKNLQKKKKQES 331
           E+  ED++E+ D DP      L+  +S +   D  D L   +    T+ K L       S
Sbjct: 264 EVIFEDTREMDDADPCVFTEVLMPKRSASSPRDDEDSLQFEVHYRDTLQKTLMTILFNHS 323

Query: 332 RRLLTWVLPFL 364
           R  +  +L +L
Sbjct: 324 R--IVMILDYL 332


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +2

Query: 212  KLLSLKSTTQKMDVSDXLSHHICKIGTVVKNLQKKKKQESRRLLTWV 352
            K + L+S      ++   SHH   +   ++ L  KKK  ++ +  W+
Sbjct: 1083 KKMKLESLLTSPPIAPSSSHHSANVQEELRELMLKKKASNQEVFNWI 1129


>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 230 STTQKMDVSDXLSHHICKIGTVVKNLQKKKKQESRRLLTWVLPFLTTCVKY 382
           S T+KM   D +   +  + T      K KK    R+ TWV+   T C K+
Sbjct: 388 SFTRKM--YDSILSIVAYMSTQSSQTSKVKKNAVTRIRTWVIAATTQCTKH 436


>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
          Length = 514

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -3

Query: 158 IFLLLHCSL--F*YFSE*KSPQWQLPARCVCSSVCILFWISVVLVTSANVGLSN 3
           I+L L C    F YF    SP W LPA  +       FW + V     + G S+
Sbjct: 402 IYLALACYALRFVYFYCLTSPWWVLPAEILQGITTAAFWAACVSYIGLHPGASH 455


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,786,906
Number of Sequences: 59808
Number of extensions: 341218
Number of successful extensions: 1010
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)