Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0858
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z84712-1|CAB06545.1|  297|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z78419-8|CAB01706.1|  297|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U42832-3|AAA83573.2|  361|Caenorhabditis elegans Tetraspanin fam...    29   2.1  
U23515-1|AAK21454.2|  511|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>Z84712-1|CAB06545.1|  297|Caenorhabditis elegans Hypothetical
           protein F26A3.7 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 337 STNMGPSIPDDMRKVLATRGVIKYXSSDEDSCVGPLPVGSEQKYSDAHKRLEERALDR 510
           S + GPSIP + R  +    +      D D  +GP+PV    +  +A  R     L +
Sbjct: 89  SQSYGPSIPSNFRPTVGP-SIPGTFGDDSDEDIGPMPVAKGDEEKEAIDRAYRMVLQK 145


>Z78419-8|CAB01706.1|  297|Caenorhabditis elegans Hypothetical
           protein F26A3.7 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 337 STNMGPSIPDDMRKVLATRGVIKYXSSDEDSCVGPLPVGSEQKYSDAHKRLEERALDR 510
           S + GPSIP + R  +    +      D D  +GP+PV    +  +A  R     L +
Sbjct: 89  SQSYGPSIPSNFRPTVGP-SIPGTFGDDSDEDIGPMPVAKGDEEKEAIDRAYRMVLQK 145


>U42832-3|AAA83573.2|  361|Caenorhabditis elegans Tetraspanin family
           protein 16 protein.
          Length = 361

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 575 QHPLFTVFNFFSYRMAFYLXKFLSKARSSRRLWASEY 465
           + PL T   FFS+R+  Y   FL+    S  +W   Y
Sbjct: 312 REPLRTTLEFFSFRIFIYSLSFLAFLALSTLIWLLNY 348


>U23515-1|AAK21454.2|  511|Caenorhabditis elegans Hypothetical
           protein R144.5 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 539 YRMAFYLXKFLSKARSSRRLWASEYFCSEPTGKGPTQESSSELXYLMTPLVANTLRM 369
           Y  A+Y   +  +AR+ +R     Y CSE   K      SS +  L++P++    R+
Sbjct: 87  YAAAYYFNLYDMRARAFQRNLCIAYLCSEKPTKETLNLFSSAMKKLVSPVLICNRRL 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,474
Number of Sequences: 27780
Number of extensions: 266243
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)