Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0858
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62270.1 68416.m06996 anion exchange family protein contains ...    30   1.5  
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family...    28   4.5  

>At3g62270.1 68416.m06996 anion exchange family protein contains
           similarity to anion exchanger 3, cardiac splice form -
           Rattus norvegicus, PIR:A42497
          Length = 703

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 99  MATSCKVCVFFSLY-FILDICGACNF 25
           +A S  VCV+ SL  F+L ICGAC+F
Sbjct: 122 LAWSGWVCVWTSLILFVLAICGACSF 147


>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
           protein / DNA photolyase family protein contains Pfam
           domain, PF00875: deoxyribodipyrimidine photolyase
          Length = 581

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +2

Query: 251 VSDXLSHHICKIGTVVKNLQK--KKKQESRRLLTWVLPFLTTCVKY*LQ---EESSNMXV 415
           V + + +H+C++   VKN  +      ES R++ W  PF  +     L    EE   + +
Sbjct: 127 VEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQNLTDLPQSWEEFKKLKL 186

Query: 416 PMRIPV 433
           P+ +PV
Sbjct: 187 PLTLPV 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,717
Number of Sequences: 28952
Number of extensions: 242304
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)