Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0856
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 1.2
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.1
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 27 2.8
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 3.7
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 26 4.9
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 26 6.5
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.5
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 6.5
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 6.5
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 6.5
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 6.5
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 118 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLE 297
R+ T A N ++ ++ TQ KLEN S +SSKS+ A S KP + P L+
Sbjct: 862 RETRTSASN-ESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSD--AAKSIKPQKPEPALK 918
Query: 298 IPSPMEKPSRSRK 336
P +++
Sbjct: 919 PVEGTADPKSTKR 931
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/82 (20%), Positives = 40/82 (48%)
Frame = +1
Query: 121 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLEI 300
K+ + N A+E+ Q +V+L+ +++ + + ++N+Y + P ++ + I
Sbjct: 81 KLIPQQSNESEAIEKPVQSTTEVELKTNELAESNSSVAVEGDENSY-AETPKKK--HSLI 137
Query: 301 PSPMEKPSRSRKATKWMKQAKV 366
+ P S A K +K+ K+
Sbjct: 138 RKRRKSPLDSSSAQKVLKKNKL 159
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 160 EQVTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLEIPSPMEKPSRS 330
+Q+ + VK + G TS+ + S +P R P+L P+P P S
Sbjct: 204 DQIAENADFVKAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPS 260
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 235 SKSEDNAYLSRKPSRRFPNLEIPSPMEKPSRSRKAT 342
S +DNA RKP + PN PS S SR ++
Sbjct: 236 SSVDDNAITPRKPFSKIPNRLSPSTQPLLSNSRHSS 271
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 145 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRK 270
T A+ + DV+ N NG +S+S DNA L ++
Sbjct: 405 TMTAIRYIDLNYVDVQYTNLRGGAYGNGNNSESSDNAQLKKE 446
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 313 EKPSRSRKATKWMKQAKVIDGKKITTTDTAIHFKKLKS 426
EKP S KA W++Q I +K D +H LKS
Sbjct: 58 EKPKVSHKAKNWVRQPFSISSRK---DDFTLHHWVLKS 92
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +1
Query: 211 PGASNGTSSKSEDNAYLSR--KPSRRFPNLEIPSPMEKPSRSRKATKWMKQAKVIDGKKI 384
P S G S++ E + + +P + P + +P P ++P R R + K + ++
Sbjct: 336 PDGSFGISARKEVERKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTEL 395
Query: 385 TTTDTAIHFKKLKSVKLGIDD 447
+ F K ++ D+
Sbjct: 396 RRLQNRVAFGKEEAEVFNFDE 416
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/75 (29%), Positives = 29/75 (38%)
Frame = +1
Query: 118 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLE 297
R AQ DA+V Q V D + S S A ++R + + E
Sbjct: 197 RSTFESAQIPDASVVQTV--VTDADNGAASVKDTIVTAESASSKGADVARSKVQDIIDNE 254
Query: 298 IPSPMEKPSRSRKAT 342
IP P E P RS +T
Sbjct: 255 IPKPSESPRRSVSST 269
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 121 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSK----SEDNAYLSRKPSRRFP 288
+++ + + + VE V ++ D+K+EN A + S +E N +S S +
Sbjct: 861 ELNEQVKTLEGYVETVLEKFNDLKIENKVPETAPDVVPSSYPPAAESNVSVSSDTSTKDV 920
Query: 289 NLEIPSPMEKPSR 327
+ PS E+P++
Sbjct: 921 EKQEPSSAEQPAQ 933
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 217 ASNGTSSKSEDNAYLSRK-PSRRFPNLEIPSPMEKPS 324
+S+ +S S+ + +L + PS +L+ PSP KPS
Sbjct: 136 SSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPS 172
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 335 LRERDGFSIGLGISKFGKRLEGFL 264
L D F++ + +SK GK GFL
Sbjct: 804 LTRNDPFTLTIAVSKIGKNASGFL 827
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 169 TQEVKDVKLENGNAPGASN--GTSSKSEDNAYLSRKPSRRFPNLEIPSPMEKPSRSRKAT 342
+ +++D N NA N TS + EDN R + R LE P P++ ++ T
Sbjct: 345 SSQIRDHPSTNNNASSYQNFNETSDEGEDNDATIRANNVRSSFLEAPLPVQPNVQAETVT 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,957
Number of Sequences: 5004
Number of extensions: 60535
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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