Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0856
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076... 32 0.55
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 30 2.2
09_02_0205 + 5772442-5772831 29 3.9
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 29 5.2
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 29 5.2
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947... 28 6.8
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 28 9.0
05_03_0485 + 14608663-14608989,14609265-14609535,14609720-146098... 28 9.0
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 28 9.0
>11_05_0078 -
18906900-18907082,18907104-18907337,18907429-18907653,
18907739-18907909,18907994-18908109,18908215-18908369,
18908450-18908573,18909007-18909107,18909215-18909297,
18909383-18909607,18909694-18909810,18910488-18910640
Length = 628
Score = 31.9 bits (69), Expect = 0.55
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Frame = +1
Query: 181 KDVKLENGNA--PGASNGTSSKSEDNAYLSRKPSRRFPNLEIPSPMEKPSRSRKAT--KW 348
K V LENG P A SS S D + +S S ++P+ S + +PS+
Sbjct: 111 KLVALENGGLHNPSALVFKSSWS-DESKISENKSFQYPHT---SSVHRPSKDEDIAFMSI 166
Query: 349 MKQAKVIDGKKITTTD-TAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEI 504
++ ++I K++T+ + TA+ ++LK I+ DDLA + E D++
Sbjct: 167 IELGELIRTKQVTSRELTAVFLRRLKRYGPIIESVITITDDLAYKQAKEADDL 219
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +1
Query: 1 ATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEV 180
AT G+++ A +A+ L AT + M S + L E Q D + + T V
Sbjct: 115 ATLGTVATAVANANATALEATKEIEAAMKVSMRAALGLGANNPKEGQLDDLTIMKETLRV 174
Query: 181 KDVKLEN 201
KD +L+N
Sbjct: 175 KDEELQN 181
>09_02_0205 + 5772442-5772831
Length = 129
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 476 RTKKWNLTKLREVDNLRPTGNYITRYKITGSRSGRRS 586
+T++ N RE+D LR T K+T + +GRRS
Sbjct: 74 KTRRENERLTRELDELRAAATEKTERKMTSAAAGRRS 110
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 154 AVEQVTQEVKDVKLENGNAPGASNGTS-SKSEDNAYLSRKPSRRFPNLEIPSPMEKPSRS 330
AV + E+K + +G AP A G+S + ++ + R+PS+ P P P S
Sbjct: 128 AVGALCGEMKGKMVVSGGAPPAGQGSSLAAAQGTDNVKREPSQVAAPAPAPPPATLPPSS 187
Query: 331 RKA 339
KA
Sbjct: 188 SKA 190
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 460 LDDLAKNKKVELDEIKRS*QLAANRELHHTL 552
+DD +NKK+ ++ +K S L N+ELH TL
Sbjct: 124 IDDAMRNKKLHVNRLKDSRLL--NKELHRTL 152
>06_03_1162 +
28093749-28093851,28093939-28093997,28094691-28094766,
28094848-28094919,28095023-28095110,28095230-28095485,
28095583-28095698,28096064-28096127,28096252-28096354,
28096446-28096554,28097048-28097234
Length = 410
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = -3
Query: 316 FPSDLGSPNLE-----NALKASLKDKRYPRFYWTFHWMLP 212
FP+ G PN E N+L +L DK + FHW LP
Sbjct: 78 FPNGTGEPNEEGLSYYNSLIDALLDKGIEPYVTLFHWDLP 117
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 121 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 228
++S EAQ + AVE + K K N N GA G
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92
>05_03_0485 +
14608663-14608989,14609265-14609535,14609720-14609830,
14609870-14610423
Length = 420
Score = 27.9 bits (59), Expect = 9.0
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Frame = +1
Query: 172 QEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKP-SRRFPNLEIPSPMEKPSRSRKATKW 348
+ VK + G A +SS+S D K + + N + + P RSRK +
Sbjct: 227 ENVKAITTREGTNGIAREASSSESADKEVQPEKTVPQEYCNTRL---LPFPQRSRKPSVD 283
Query: 349 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKK-VELDEIKRS*QLA 525
+ A+ ++ IH L + + Y ++L D+ NK+ + E+ + +
Sbjct: 284 EQFARFVE------VIQKIHINVLLLDAMQVPTYARYLKDILNNKRPLPTTEVVKLTEQC 337
Query: 526 ANRELHHTLQNHRQPQRP 579
+N LH + + P P
Sbjct: 338 SNVILHRLPEKKKNPGCP 355
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +1
Query: 55 SATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTS 234
+ATD+++ SS Y ++ R T ++ A +++ + L N+P + NG S
Sbjct: 86 TATDNISRNAASS--YSENDNRPRETPGRDLIARLKERVNASRKRSLNRENSPSSPNGLS 143
Query: 235 SKSEDNAYLSRKPSRR 282
+ S ++ +PS R
Sbjct: 144 ATSSSSSRTVSRPSHR 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,688,615
Number of Sequences: 37544
Number of extensions: 411080
Number of successful extensions: 1282
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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