Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0856
(744 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.046
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 33 0.32
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 31 1.3
SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12) 30 1.7
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 30 2.3
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048) 29 3.0
SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7) 29 3.0
SB_8032| Best HMM Match : IBB (HMM E-Value=0.46) 29 3.0
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013) 28 7.0
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07) 28 9.2
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048) 28 9.2
>SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/48 (54%), Positives = 29/48 (60%)
Frame = +3
Query: 522 CGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRAAFDETGKGEGXRR 665
C G + T A AVDRLTDT KYTGSH+ FDETGKG G +
Sbjct: 99 CEGKGPVASKTTKVVKAGAVDRLTDTRKYTGSHKERFDETGKGRGCNK 146
>SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 54.0 bits (124), Expect = 1e-07
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +3
Query: 477 EQKSGT*RN*EKLTT--C-GQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRAAFDETGK 647
E+K G+ KLT C G+ TS TK+ V+RLTDT YTGSH+ FD++GK
Sbjct: 426 EKKFGSKDQVGKLTEKICKGKGPATSGATKA-VKVGGVERLTDTKCYTGSHKERFDKSGK 484
Query: 648 GEGXR-RQERLSRRV-GYVTGYQHKDTYN 728
G+G R +R + GYV Y+ + TY+
Sbjct: 485 GKGIEGRVDRDDKAAQGYVGNYKGEGTYD 513
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 35.5 bits (78), Expect = 0.046
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Frame = +1
Query: 172 QEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLEIPSPMEKPSRSRK----- 336
++ K+VK + G ++GTS KSE A + K + + + +KP S K
Sbjct: 483 EKKKEVKKKKGKEKSTTSGTSKKSE--AEIQEKKEIKVEEAKPVAKSDKPQESVKDIERS 540
Query: 337 ------AT--KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGID--DYQKFLDDLAKNKK 486
AT K ++A +I+ +K++ + + K + VK+ + D +++L +N++
Sbjct: 541 EVYQKLATDYKNTEKALLIEQEKLSEMEKELENSKDEKVKIEQEKADLDIAIENLKRNQE 600
Query: 487 VELDEIK 507
+EL+E+K
Sbjct: 601 IELEELK 607
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 32.7 bits (71), Expect = 0.32
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 4/176 (2%)
Frame = +1
Query: 133 EAQNTDAAVEQVTQE--VKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLEIPS 306
E N A VE QE + +L++ ++G K E N L+R+ +R + +
Sbjct: 1368 ELLNAKAEVEVKLQEQLTANDELDDRLEMEKTSGERLKDEFNDMLARERNRAIEDCK--- 1424
Query: 307 PMEKPSRSRKATKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKK 486
+ R R+ + K+ + D +K + + K K + ++F + K KK
Sbjct: 1425 --DDLERERRRAQKEKEDLIYDHEK---REKVLQDGAEKDRKGFEKEKEEFEEAFRKEKK 1479
Query: 487 VELDEI-KRS*QLAAN-RELHHTLQNHRQPQRP*ID*QTQANILARTGQRSMKLEK 648
+ DE+ K+ LA ++L L+N + ++ + + + NI Q+S+ LEK
Sbjct: 1480 IFQDELSKKDEDLAQKLQDLRTQLENEMEKEKAELQSRIETNIYGEEIQKSVDLEK 1535
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +1
Query: 169 TQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRK--PSRRFPNLE---IPSPMEKPSRSR 333
++E + V+ N +P + SSK + + PSR P ++ + P EKP RSR
Sbjct: 144 SKETQPVQQRNPASPAKKHHRSSKETPTSLAEKPSWPSRETPPVQPRNLAGPAEKPHRSR 203
Query: 334 KATK 345
+ T+
Sbjct: 204 RETQ 207
>SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)
Length = 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 127 STEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLEIPS 306
S E N D +E Q +V+ N P T++KS D RKP R + +
Sbjct: 94 SLEQANRDILIEDTQQN--EVQNSQRNVPRCELHTTTKSTDGTVARRKPKSRIST--VRN 149
Query: 307 PMEKPSRSRKATKWMKQAK 363
++PS + T +++Q K
Sbjct: 150 LTKRPS-TTPITDYLRQKK 167
>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
Length = 1287
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 148 DAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKP 273
DAA+ Q T E LE+ +A A N + + DN ++RKP
Sbjct: 1179 DAALAQETVEEPLKSLESSHAVNALNHSMNNGGDNTKINRKP 1220
>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 136 AQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLEIPSPME 315
A+N ++ KD + + P + + S+ D + RKP + N P+P +
Sbjct: 555 AENLFEVSDEENDNDKDNEEDRFFEP-SQEASGSEHSDEEVVDRKPPKNVTNKPPPAPAK 613
Query: 316 KPSRSRKATK 345
KPS+ + K
Sbjct: 614 KPSKVKHLPK 623
>SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)
Length = 233
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 175 EVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLEIPSPMEKPSRSRKATK 345
E + K E G + G + D A+ + + F LE+PSP + P + +KA++
Sbjct: 7 EAQAKKQEESAENGKNKGKGKRKRDEAHQVNRITFFF--LEVPSPSKSPVKKKKASQ 61
>SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)
Length = 504
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 143 FCASVDIFLYKCLMYLCDDIIYYASESVADRRLSDAL 33
F AS DI +CL D +IY AS + D L D L
Sbjct: 153 FIASEDILQIQCLYPDTDSVIYIASPAALDPPLGDYL 189
>SB_8032| Best HMM Match : IBB (HMM E-Value=0.46)
Length = 191
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 175 EVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLEIPSPMEKPSRSRKATK 345
E + K E G + G + D A+ + + F LE+PSP + P + +KA++
Sbjct: 7 EAQAKKQEESAENGKNKGKGKRKRDEAHQVNRITFFF--LEVPSPSKSPVKKKKASQ 61
>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +1
Query: 166 VTQEVKDVKLENGNAPGASNGTSSKSEDNAYLSR----KPSRRFPNLEIPSPMEKPS 324
++++++D GN P N T SEDN + R +P R E PS E+ S
Sbjct: 404 ISRQIRDDDHSKGNTPVIGNVTIGFSEDNKKVERAVTKQPLSRRARSETPSSNERSS 460
>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 525 GQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRAAFDETGKGEGXRRQERLSRR 686
G P +T TK A+ A D D S + + +E G+G+ ++E+ ++
Sbjct: 814 GNPLVTGRETKKCASRAKDDDFVDDSSSSSADEGGDEEGGEGKVKAKKEKKDKK 867
>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 340
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 217 ASNGTSSKSEDNAYLSRKPSRRFPNLEI-PSPMEKPSRSRKATKWMKQAK 363
A++G ++K +++PS P P+ KP++S KATK K K
Sbjct: 135 ATSGATAKGSGTPTSTKQPSSSRPFKSTKPTKSTKPTKSTKATKSTKPTK 184
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 172 QEVKDVKLENGNAPGASNGTSSKSEDNAYLSRKPSRRFPNLE 297
Q V L+N G S+GT+S+ ++ Y S + S +FP+LE
Sbjct: 259 QPVDGTVLDNITGLGNSHGTNSELSNSLY-SYQDSMKFPSLE 299
>SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)
Length = 766
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 421 KSVKLGIDDYQKFLDDLAKNKKVELDE 501
K V++ D+ + FLD LAK K+E DE
Sbjct: 719 KLVRVSSDENELFLDYLAKRAKLERDE 745
>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
Length = 763
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = -3
Query: 643 PVSSNAALCEPVYLLVSVNRSTAAAAAGDFVTCDVIPGWPQVVNFS*FRQVPLFCSSRDH 464
P S N++LC+ V +S+ A AAGD D++ V + FR+VPL C +
Sbjct: 212 PGSFNSSLCQ------YVKKSSVATAAGDGADSDIV-----VTEPTWFRKVPL-CDIANA 259
Query: 463 LETSGSRRCRVLP 425
+G VLP
Sbjct: 260 FSIAGVLSVIVLP 272
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,405,358
Number of Sequences: 59808
Number of extensions: 463832
Number of successful extensions: 1795
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1786
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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