Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0855
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    28   1.8  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    27   2.4  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   4.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   5.5  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    26   5.5  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   7.3  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   7.3  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   9.7  

>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 529 SILATRPRFASETVIYY*FLHYLMNVIIHINLPLQSLYLLKKKPHQNPLRSYK 687
           +IL    R  S  ++ Y FL+Y    II + LPL +L+ ++   +     +Y+
Sbjct: 521 NILVVSHRIVSNILMTY-FLNYHPEDIIDVGLPLHTLFCIESDRYGTTCMAYR 572


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 589 GEINNKLQFPKRSEGGSLVYL*NKCVSVLTLWSIASVTNTTA 464
           G+ N +L F    +G  L     KC    TL+ IAS T TTA
Sbjct: 180 GQENLELHFVSNIDGTHLAEALKKCDPETTLFLIASKTFTTA 221


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 175 PMAIGAILNRR*RYYLKQGL 116
           PM+IGAIL++   Y LK GL
Sbjct: 145 PMSIGAILHKNSPYNLKNGL 164


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +1

Query: 7   ILFHNWEDSARNGNFWVLQRDFGSLYCYMLYDWELFRGPV*GNTVIFYLISHRSPSEQIS 186
           + + +W  S + G+F +L     ++  ++L    LF       TV F  ++  SP EQ  
Sbjct: 139 LTYSSWSFSVKGGSFLLLLPLAYNITLFLLVIIPLFFPRAWSPTVKFSKVARPSP-EQTC 197

Query: 187 TIRFDICFFYLTIDGV 234
           +I F + F Y  ++G+
Sbjct: 198 SI-FSLIFTYGWLNGI 212


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 592 YLMNVIIHINLPLQSLYLLKKKPHQNPLRSYKDLSIHMGYR--DRESDFVLYHGVILK 759
           YL NV I + L L+  +L       N   +  DL I    +  D++S+FVLY  V+ K
Sbjct: 186 YLTNVFIAVPLNLEKQFL-------NSYETLTDLVIPRSAKKLDQDSEFVLYTVVVFK 236


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 10  LFHNWEDSARNGNFWVLQRDFGSLYCYMLYDWEL 111
           ++H  +DS  + N ++  RDFG  +   L D E+
Sbjct: 598 VYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEV 631


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 499 LWSIASVTNTTAVWEYGYLSSTPTLPTYEQISWKKYSYHIVFL*DVSYD-DIF*NTSNAN 323
           +W  +   N+T + E+GY++    L  +  I+   Y   + +L  + +D D   + ++A 
Sbjct: 342 IWVSSQFPNSTVLNEHGYVTYNGWLAQWSMITLFDYKTTLAYLAYLGFDTDGRGHNTDAL 401

Query: 322 SVMLVRVT 299
            VM  RV+
Sbjct: 402 KVMRKRVS 409


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 269 YSFLLSNDRWRY 304
           YS LLS+DRW Y
Sbjct: 249 YSLLLSDDRWEY 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,085
Number of Sequences: 5004
Number of extensions: 69494
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)