Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0855
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    30   2.3  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    30   2.3  
AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical...    29   3.0  
AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    28   9.1  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 785  RVGQCYR*FFKITPWYKTKSLSLSLYPIC 699
            R   C    F I  WY T+ LS+  YP C
Sbjct: 956  RCKYCTSEIFNIVRWYTTEDLSVDSYPFC 984


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 785  RVGQCYR*FFKITPWYKTKSLSLSLYPIC 699
            R   C    F I  WY T+ LS+  YP C
Sbjct: 997  RCKYCTSEIFNIVRWYTTEDLSVDSYPFC 1025


>AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical
           protein Y57A10A.27 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 115 ETIPSHITYNNTENRSLFVIPRSSRFLP 32
           +T+P+ I YNN + + L V P S   LP
Sbjct: 61  QTLPTQIAYNNGDEQLLIVGPTSEALLP 88


>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 494 VYSFRNKHYGSVGVRLPIINTYLTY 420
           VYS  +KH+ S+G ++  I+ +L Y
Sbjct: 16  VYSLNDKHHNSIGFQITAISQFLIY 40


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 461 VGVRLPIINTYLTYLRTDQLEKVFL 387
           +GV LPII   L+YL  ++L+ +FL
Sbjct: 802 LGVDLPIIRRILSYLDKNELKMIFL 826


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 461 VGVRLPIINTYLTYLRTDQLEKVFL 387
           +GV LPII   L+YL  ++L+ +FL
Sbjct: 802 LGVDLPIIRRILSYLDKNELKMIFL 826


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065,342
Number of Sequences: 27780
Number of extensions: 373360
Number of successful extensions: 880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)