Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0855
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.36 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   7.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 103 SHITYNNTENRSLFVIPRSS 44
           S++T NNT N S   IPR+S
Sbjct: 724 SYLTTNNTSNNSQLQIPRAS 743


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 802 MRPISVEWDNVIDNFLKSLHGIKQSRFLCPYIPYVCLNLYNYAT 671
           +RP +V++D        +++  K SRF  P+  ++ LN+  ++T
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPF-SFLILNVVYWST 381


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 182 ICSDGDRCDIK*KMTVLPQTGPRNNSQSY 96
           + SDG+  +++  ++V PQ  P    + Y
Sbjct: 383 LVSDGNEAEVEGTLSVQPQANPVKGFEEY 411


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 544 RPRFASETVIYY*FLHYLMNVIIHINLPLQSLYLLKKKPHQNPLRSYKDLSI 699
           RP +++  +  Y ++  +MN    I+  + S Y+L      + + S K L+I
Sbjct: 310 RPIWSNFPIYKYKYIREIMNKESRISAAIDSGYILNNDGKWHNIYSEKGLNI 361


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 544 RPRFASETVIYY*FLHYLMNVIIHINLPLQSLYLLKKKPHQNPLRSYKDLSI 699
           RP +++  +  Y ++  +MN    I+  + S Y+L      + + S K L+I
Sbjct: 310 RPIWSNFPIYKYKYIREIMNKESRISAAIDSGYILNNDGKWHNIYSEKGLNI 361


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +1

Query: 610 IHINLPLQSLY-LLKKKPHQNP 672
           IH NLP  SLY   K+  ++ P
Sbjct: 596 IHYNLPYSSLYGRFKRGKYEEP 617


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 320 CYAGKSNAICH*IAETNIKTS 258
           CY G++  IC    +T  K S
Sbjct: 266 CYGGRNRKICEAFVKTGKKIS 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,433
Number of Sequences: 438
Number of extensions: 5139
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)