Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0855
         (813 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62990.1 68416.m07076 expressed protein predicted protein, Ar...    29   3.7  
At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pin...    29   3.7  
At5g57130.1 68418.m07135 expressed protein                             29   4.9  

>At3g62990.1 68416.m07076 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 134

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 676 ATDFDAVFFLIDRVIEEEGLYV**HSLNSGEINNKLQFPKRSEGGSL 536
           +TDFD V  + D   E EG     H    GE+N+  ++P+R +G +L
Sbjct: 63  STDFDTVEEVADVAGENEG-----HVDEDGEVNSYRKWPERRDGENL 104


>At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 336

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 22  WEDSARNGNFWVLQRDFGSLY 84
           W + ARN N W  Q DFG ++
Sbjct: 151 WLNKARNDNLWAKQCDFGRIF 171


>At5g57130.1 68418.m07135 expressed protein
          Length = 920

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 610 IHINLPLQSLYLLKKKPHQNPLRSYKDLS-IHMGYRDRESDFVLYHGVILK 759
           I+ N PL   + L + P QNPL      S  H   R RE D  L   V+++
Sbjct: 132 INPNFPLWQTHFLNQSPDQNPLLLSSSASHHHQQQRLREIDLKLVVDVLMR 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,188
Number of Sequences: 28952
Number of extensions: 334811
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)