Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0853
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    30   0.32 
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    29   0.74 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   3.0  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.1  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 499 VHLSNVYCISYI*INILSKSVLGTTTTMK*KLFVFD-LIAWCVECVTMIFL 648
           V  S  Y I Y  IN+ S SVL TT+    K FV+  L+  CV  + +I L
Sbjct: 241 VTTSRAYMIFYWSINVGSLSVLATTSLESTKGFVYAYLLPLCVFVIPLIIL 291


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = -1

Query: 523 YNRHSTSEQMITIVDKIFLRLFCKLFFRESHHYN-SLFD*VAKVNCRV*LFFFNNMWKQA 347
           Y+  S + Q++ + ++ F  L CKL      H++ SLF+    +N +     F+N  K++
Sbjct: 40  YSSPSVAIQLLELNEQAFSSLGCKLDIHIVQHFSLSLFETSVGMNWK----SFSNKEKES 95

Query: 346 TSSFFRTINVL-NGKFNDFFFHSKL 275
            +SF   I++  N   +  F  SKL
Sbjct: 96  VTSFLCKISLEDNNLLSVHFVRSKL 120


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 406 VAKVNCRV*LFFFNNMWKQATSSFFRTIN 320
           + KV+C +  F+ NN +    SSF + +N
Sbjct: 623 IVKVSCPIMFFYLNNWYSVKPSSFTKGLN 651


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
 Frame = -2

Query: 711 QTIRRLTGKQNIEISESISAP*KYHSYTF-HAPR----NEIKYKKF----SFHRRG 571
           QT+    GK+  + SE  S+   +HS +  HAP     N+  YKK     SFH +G
Sbjct: 226 QTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKG 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,224
Number of Sequences: 5004
Number of extensions: 55532
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)