Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0853
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2979| Best HMM Match : GED (HMM E-Value=0.24)                       29   3.1  
SB_55999| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)              28   9.6  
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   9.6  
SB_15814| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_2979| Best HMM Match : GED (HMM E-Value=0.24)
          Length = 194

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = -1

Query: 418 LFD*VAKVNCRV*LFFFNNMWKQATSSFFRTINVLNGKFNDFFFHSKLNNLKPPKRSELS 239
           +FD +A+ + +  L F  N+WK A +  F+ +        D      L N  P   + +S
Sbjct: 20  VFDKIARYSPQEKLKFIENVWKPAGN--FQALLEFRVDSGDQILEQHLEN-APRNATYIS 76

Query: 238 RILVSNELRIILMHLGNAIDKEVKD--YISARERDKCDRA 125
           + + +  +  +  H+ N + +E++D  Y S    +  D A
Sbjct: 77  KTIQNQMISTVGAHILNNLSQEMRDSKYFSVMADEAADIA 116


>SB_55999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 633 YTFHAPRNEIKYKKFSFHRRGSAQY 559
           +TFH P+N +  +K +FH R + ++
Sbjct: 18  FTFHGPKNGLVNRKITFHGRRNRRF 42


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 541  LFICRKYNRHSTSEQMITIVDK----IFLRLFCKLFFRESHHYNS 419
            +F+C  Y   +    ++ + +      F+R+FCK F+R   H NS
Sbjct: 1030 IFMCFMYTNAALDPIVLILFNSEIRMAFIRVFCKRFYRVDPHSNS 1074


>SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
          Length = 335

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 541 LFICRKYNRHSTSEQMITIVDK----IFLRLFCKLFFRESHHYNS 419
           +F+C  Y   +    ++ + +      F+R+FCK F+R   H NS
Sbjct: 277 IFMCFMYTNAALDPIVLILFNSEIRMAFIRVFCKRFYRVDPHSNS 321


>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 764

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 541 LFICRKYNRHSTSEQMITIVDKIFLRLFCKLFFRESHH 428
           LFIC + +R   S    T V K F   FCK  +  ++H
Sbjct: 366 LFICDEAHRLKNSAIKTTTVAKAFYDKFCKAVYFVNYH 403


>SB_15814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 35  VSTFLFHFLSFRLE*KVCGKCSSRSGQSEPRSVAFISLSCRYIILYFFV 181
           ++ F  +F +FR++ K C      + +  P  +AF+S+ C   I+  F+
Sbjct: 160 MAVFAPYFYTFRVQGKDCISSWEPAFEQLPTQIAFVSVICVMFIIVPFI 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,712,365
Number of Sequences: 59808
Number of extensions: 371051
Number of successful extensions: 652
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)