Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0852
(573 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284; Eukary... 162 5e-39
UniRef50_UPI0000D9B7B9 Cluster: PREDICTED: similar to ribosomal ... 149 3e-35
UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5; Eukaryot... 138 6e-32
UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S riboso... 137 1e-31
UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2; Cyt... 126 4e-28
UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26; Eukaryo... 120 3e-26
UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S riboso... 107 2e-22
UniRef50_Q8SRG6 Cluster: 40S RIBOSOMAL PROTEIN S2; n=1; Encephal... 102 7e-21
UniRef50_O55213 Cluster: Ribosomal protein S2; n=11; Coelomata|R... 80 4e-14
UniRef50_UPI0000EB449D Cluster: UPI0000EB449D related cluster; n... 75 2e-12
UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length... 71 3e-11
UniRef50_UPI0000DC060C Cluster: UPI0000DC060C related cluster; n... 70 3e-11
UniRef50_Q8TBR1 Cluster: MGC27348 protein; n=1; Homo sapiens|Rep... 70 4e-11
UniRef50_Q6CKL2 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 69 6e-11
UniRef50_Q3LVZ1 Cluster: Ribosomal protein S2; n=1; Bigelowiella... 69 8e-11
UniRef50_Q16TN2 Cluster: Putative uncharacterized protein; n=1; ... 68 2e-10
UniRef50_Q6LXD3 Cluster: 30S ribosomal protein S5P; n=6; Euryarc... 68 2e-10
UniRef50_Q673Q8 Cluster: Ribosomal protein S5; n=1; uncultured m... 65 1e-09
UniRef50_UPI0000DBFACC Cluster: UPI0000DBFACC related cluster; n... 64 3e-09
UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8; Euthe... 64 3e-09
UniRef50_A0E2R7 Cluster: Chromosome undetermined scaffold_75, wh... 64 3e-09
UniRef50_Q8U017 Cluster: 30S ribosomal protein S5P; n=34; Archae... 64 3e-09
UniRef50_A7DRN6 Cluster: Ribosomal protein S5; n=1; Candidatus N... 62 7e-09
UniRef50_Q9UX87 Cluster: 30S ribosomal protein S5P; n=5; Sulfolo... 61 2e-08
UniRef50_Q6L1A7 Cluster: 30S ribosomal protein S5P; n=7; Archaea... 61 2e-08
UniRef50_P26815 Cluster: 30S ribosomal protein S5P; n=3; Halobac... 59 8e-08
UniRef50_A0RUE7 Cluster: 30S ribosomal protein S5P; n=1; Cenarch... 59 8e-08
UniRef50_UPI0000E20F35 Cluster: PREDICTED: similar to ribosomal ... 58 1e-07
UniRef50_A7D107 Cluster: Ribosomal protein S5; n=1; Halorubrum l... 58 1e-07
UniRef50_UPI0000D62CF0 Cluster: UPI0000D62CF0 related cluster; n... 58 2e-07
UniRef50_UPI000057EB46 Cluster: UPI000057EB46 related cluster; n... 58 2e-07
UniRef50_UPI0000D9EF8A Cluster: PREDICTED: similar to 40S riboso... 56 6e-07
UniRef50_UPI0000DC004A Cluster: UPI0000DC004A related cluster; n... 56 8e-07
UniRef50_O15578 Cluster: Ribosomal protein S2; n=1; Entamoeba hi... 55 1e-06
UniRef50_Q7XYL2 Cluster: Ribosomal protein rpS5; n=1; Bigelowiel... 54 2e-06
UniRef50_P59123 Cluster: 30S ribosomal protein S5; n=22; Bacteri... 52 1e-05
UniRef50_Q74MD4 Cluster: 30S ribosomal protein S5P; n=1; Nanoarc... 51 2e-05
UniRef50_Q9PQP3 Cluster: 30S ribosomal protein S5; n=2; Firmicut... 51 2e-05
UniRef50_Q6YR05 Cluster: 30S ribosomal protein S5; n=22; Bacteri... 49 7e-05
UniRef50_UPI0000D9ACAD Cluster: PREDICTED: similar to 40S riboso... 48 2e-04
UniRef50_Q7Y258 Cluster: Ribosomal protein S5 precursor; n=1; Ch... 48 2e-04
UniRef50_Q8EUD0 Cluster: 30S ribosomal protein S5; n=3; Mycoplas... 48 2e-04
UniRef50_O15579 Cluster: Ribosomal protein S2; n=1; Entamoeba hi... 48 2e-04
UniRef50_Q8RIH3 Cluster: 30S ribosomal protein S5; n=3; Fusobact... 46 6e-04
UniRef50_P93014 Cluster: 30S ribosomal protein S5, chloroplast p... 46 6e-04
UniRef50_Q9X1J2 Cluster: 30S ribosomal protein S5; n=6; Bacteria... 46 8e-04
UniRef50_Q9RSL1 Cluster: 30S ribosomal protein S5; n=2; Deinococ... 46 8e-04
UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 ... 45 0.001
UniRef50_A0T0Y9 Cluster: Chloroplast 30S ribosomal protein S5; n... 45 0.001
UniRef50_A7QPU4 Cluster: Chromosome chr10 scaffold_138, whole ge... 44 0.002
UniRef50_P59122 Cluster: 30S ribosomal protein S5; n=40; Bacteri... 44 0.002
UniRef50_Q5NQ48 Cluster: 30S ribosomal protein S5; n=155; cellul... 44 0.003
UniRef50_Q8TGP1 Cluster: Uncharacterized protein YGL123C-A; n=1;... 44 0.003
UniRef50_Q92QF3 Cluster: 30S ribosomal protein S5; n=203; cellul... 43 0.004
UniRef50_Q7NEG9 Cluster: 30S ribosomal protein S5; n=34; cellula... 42 0.008
UniRef50_O67563 Cluster: 30S ribosomal protein S5; n=5; Bacteria... 42 0.008
UniRef50_P66575 Cluster: 30S ribosomal protein S5; n=128; Bacter... 42 0.014
UniRef50_Q9XD19 Cluster: 30S ribosomal protein S5; n=17; Bacteri... 42 0.014
UniRef50_Q6AP53 Cluster: 30S ribosomal protein S5; n=8; Bacteria... 40 0.031
UniRef50_P73304 Cluster: 30S ribosomal protein S5; n=30; cellula... 40 0.041
UniRef50_Q5FFR5 Cluster: 30S ribosomal protein S5; n=5; canis gr... 37 0.39
UniRef50_Q5L704 Cluster: 30S ribosomal protein S5; n=7; Chlamydi... 36 0.51
UniRef50_Q4EF76 Cluster: Putative uncharacterized protein; n=1; ... 36 0.68
UniRef50_Q6KI38 Cluster: 30S ribosomal protein S5; n=9; Firmicut... 36 0.68
UniRef50_UPI000023F324 Cluster: hypothetical protein FG00649.1; ... 36 0.89
UniRef50_A7CZB7 Cluster: Ribosomal protein S5; n=1; Opitutaceae ... 36 0.89
UniRef50_A6PPX8 Cluster: Ribosomal protein S5; n=4; Bacteria|Rep... 36 0.89
UniRef50_A4R1A2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_Q2GVX5 Cluster: Putative uncharacterized protein; n=1; ... 33 3.6
UniRef50_Q9RS86 Cluster: Ribosomal protein S2-related protein; n... 33 4.8
UniRef50_A7RP03 Cluster: Predicted protein; n=1; Nematostella ve... 33 4.8
UniRef50_A2RAI1 Cluster: Remark: literature about the mitochondr... 33 6.3
UniRef50_P33759 Cluster: 37S ribosomal protein S5, mitochondrial... 32 8.3
>UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284;
Eukaryota|Rep: 40S ribosomal protein S2 - Homo sapiens
(Human)
Length = 293
Score = 162 bits (394), Expect = 5e-39
Identities = 76/87 (87%), Positives = 79/87 (90%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAI 427
F LG SL D VLKIMPVQKQTRAGQRTRFKAFVAIGD NGH+G GVKCSKEVATAIRGAI
Sbjct: 96 FFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAI 155
Query: 428 ILAKLSVLPVRRGYWGNKIXKLHTVPC 508
ILAKLS++PVRRGYWGNKI K HTVPC
Sbjct: 156 ILAKLSIVPVRRGYWGNKIGKPHTVPC 182
Score = 69.7 bits (163), Expect = 4e-11
Identities = 32/44 (72%), Positives = 36/44 (81%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
K + KEW+PVTKLGRLV++ KI L IYLFSLPIKE EIIDFF
Sbjct: 54 KAEDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFF 97
Score = 40.7 bits (91), Expect = 0.024
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SV RLIPAPRGTGI
Sbjct: 181 PCKVTGRCGSVLVRLIPAPRGTGI 204
>UniRef50_UPI0000D9B7B9 Cluster: PREDICTED: similar to ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to ribosomal protein S2 - Macaca mulatta
Length = 272
Score = 149 bits (362), Expect = 3e-35
Identities = 71/87 (81%), Positives = 74/87 (85%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAI 427
F LG SL D VLKIMPVQKQT AGQ TRFKAFV IGD NGH+G VKCSKEVATAIRGAI
Sbjct: 36 FFLGASLKDEVLKIMPVQKQTCAGQHTRFKAFVPIGDYNGHVGLSVKCSKEVATAIRGAI 95
Query: 428 ILAKLSVLPVRRGYWGNKIXKLHTVPC 508
ILAKLS++PV RGYWGNKI K HTVPC
Sbjct: 96 ILAKLSIVPVCRGYWGNKIGKPHTVPC 122
Score = 55.6 bits (128), Expect = 8e-07
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = +3
Query: 144 VPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
+PVTKLG L+ + KI L IYLFSLPIKE EIIDFF
Sbjct: 1 MPVTKLGHLINDMKIKSLEEIYLFSLPIKESEIIDFF 37
>UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5;
Eukaryota|Rep: 40S ribosomal protein S2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 253
Score = 138 bits (335), Expect = 6e-32
Identities = 59/82 (71%), Positives = 72/82 (87%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P LND V+K++PVQKQTRAGQRTRFKAFV IGD++GH+G G+KC+KEVATAIRGAII+ K
Sbjct: 73 PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGK 132
Query: 440 LSVLPVRRGYWGNKIXKLHTVP 505
LS++P+RRGYWG + HTVP
Sbjct: 133 LSIMPIRRGYWGTALGDPHTVP 154
Score = 72.1 bits (169), Expect = 8e-12
Identities = 29/47 (61%), Positives = 40/47 (85%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFFSAR 263
++++KEWVPVTKLGRLV+ GKI + IYL+SLPIKE++I+D+F R
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPR 74
Score = 39.1 bits (87), Expect = 0.072
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P+ V+G C SVT RL+PAPRG G+
Sbjct: 154 PVKVSGKCGSVTVRLVPAPRGAGL 177
>UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 237
Score = 137 bits (332), Expect = 1e-31
Identities = 65/79 (82%), Positives = 70/79 (88%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
D VLKIMPVQKQT AGQRTRF AFVAIGD NGH G GVKCSKEVATAIR AIILAKLS++
Sbjct: 48 DEVLKIMPVQKQTCAGQRTRFTAFVAIGDYNGHFGLGVKCSKEVATAIREAIILAKLSIV 107
Query: 452 PVRRGYWGNKIXKLHTVPC 508
P+R+GYWGNKI K +TVPC
Sbjct: 108 PLRQGYWGNKIGKPNTVPC 126
Score = 36.7 bits (81), Expect = 0.39
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG+C SV LIPAPRGTG+
Sbjct: 125 PCKVTGHCGSVLVCLIPAPRGTGM 148
>UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2; n=12;
Eukaryota|Rep: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2 -
Ostreococcus lucimarinus CCE9901
Length = 273
Score = 126 bits (304), Expect = 4e-28
Identities = 60/108 (55%), Positives = 80/108 (74%), Gaps = 3/108 (2%)
Frame = +2
Query: 191 QTXEHLLVF---FTNQRIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDN 361
++ EH+ +F +I +H +G L D V+KI PVQKQT AGQR RFKAFV +GD
Sbjct: 66 KSLEHIFLFSLPIKEHQIVEH--FIGGELKDEVMKICPVQKQTTAGQRMRFKAFVVVGDC 123
Query: 362 NGHIGXGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIXKLHTVP 505
NGHIG GVK KEVA +I+G++ILAKL+++PVRRGYWG+K+ + HT+P
Sbjct: 124 NGHIGLGVKACKEVAHSIQGSMILAKLNIVPVRRGYWGSKLGEPHTIP 171
Score = 60.5 bits (140), Expect = 3e-08
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +3
Query: 126 EDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
+D+ WVP TKLGRLV++GKI L I+LFSLPIKE +I++ F
Sbjct: 45 DDKDVWVPCTKLGRLVQQGKIKSLEHIFLFSLPIKEHQIVEHF 87
Score = 35.5 bits (78), Expect = 0.89
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P V G C SV RLIPAPRG GI
Sbjct: 171 PTKVHGKCGSVHVRLIPAPRGAGI 194
>UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26;
Eukaryota|Rep: 40S ribosomal protein S2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 254
Score = 120 bits (288), Expect = 3e-26
Identities = 52/81 (64%), Positives = 65/81 (80%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P L D V+ I PVQKQTRAGQRTRFKA V +GD+NGH+G G+K +KEVA AIR II+AK
Sbjct: 74 PGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAK 133
Query: 440 LSVLPVRRGYWGNKIXKLHTV 502
LSV+P+RRGYWG + + H++
Sbjct: 134 LSVIPIRRGYWGTNLGQPHSL 154
Score = 60.9 bits (141), Expect = 2e-08
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +3
Query: 129 DQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++K WVPVTKLGRLV+ GKI + I+L SLP+KEF+IID
Sbjct: 31 EEKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIID 70
Score = 37.9 bits (84), Expect = 0.17
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1
Query: 514 TGNCXSVTFRLIPAPRGTGI 573
TG C SVT RLIPAPRG+GI
Sbjct: 159 TGKCGSVTVRLIPAPRGSGI 178
>UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 213
Score = 107 bits (257), Expect = 2e-22
Identities = 48/61 (78%), Positives = 54/61 (88%)
Frame = +2
Query: 323 RTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIXKLHTV 502
+ RFKAFVAIGD+NG +G GVKCSKE ATAIRGA+ILAKLS+LPV RGYWGN+I K HTV
Sbjct: 61 KIRFKAFVAIGDDNGQVGPGVKCSKEAATAIRGAVILAKLSILPVPRGYWGNEIRKPHTV 120
Query: 503 P 505
P
Sbjct: 121 P 121
Score = 38.3 bits (85), Expect = 0.13
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = +1
Query: 457 PKRLLG*QDXKATHRPLXVTGNCXSVTFRLIPAPRGTG 570
P+ G + K P VTG C SV RLIPAPRGTG
Sbjct: 106 PRGYWGNEIRKPHTVPGKVTGRCGSVLVRLIPAPRGTG 143
Score = 33.5 bits (73), Expect = 3.6
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 129 DQKEWVPVTKLGRLVREGKI 188
+ KEW+PVT LGRLV++ KI
Sbjct: 43 EDKEWIPVTGLGRLVKDMKI 62
>UniRef50_Q8SRG6 Cluster: 40S RIBOSOMAL PROTEIN S2; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S2 -
Encephalitozoon cuniculi
Length = 242
Score = 102 bits (244), Expect = 7e-21
Identities = 49/86 (56%), Positives = 57/86 (66%)
Frame = +2
Query: 251 LLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAII 430
L G S+ + VL I VQKQTRAGQ+TR KA V +GD GH+G G K SKE A+AIRGAI
Sbjct: 58 LCGNSIKEEVLSIKSVQKQTRAGQKTRIKAVVVVGDRKGHVGIGTKASKEAASAIRGAIA 117
Query: 431 LAKLSVLPVRRGYWGNKIXKLHTVPC 508
AK ++ PVR G W K HTV C
Sbjct: 118 RAKCAIRPVRLGLWDGAQGKPHTVSC 143
Score = 43.2 bits (97), Expect = 0.004
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++++ EW+P T +GRLV+ KI L I+ FS I+E EI+D
Sbjct: 15 RKEESEWIPKTAVGRLVKMLKITSLEQIFKFSHVIREPEIVD 56
>UniRef50_O55213 Cluster: Ribosomal protein S2; n=11; Coelomata|Rep:
Ribosomal protein S2 - Rattus norvegicus (Rat)
Length = 121
Score = 79.8 bits (188), Expect = 4e-14
Identities = 37/43 (86%), Positives = 38/43 (88%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIG 376
F LG SL D VLKIMPVQKQTRAGQRTRFKAFVAIGD NGH+G
Sbjct: 71 FFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG 113
Score = 70.5 bits (165), Expect = 3e-11
Identities = 32/44 (72%), Positives = 36/44 (81%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
K + KEW+PVTKLGRLV++ KI L IYLFSLPIKE EIIDFF
Sbjct: 29 KAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFF 72
>UniRef50_UPI0000EB449D Cluster: UPI0000EB449D related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB449D UniRef100
entry - Canis familiaris
Length = 196
Score = 74.5 bits (175), Expect = 2e-12
Identities = 41/76 (53%), Positives = 50/76 (65%)
Frame = +2
Query: 281 LKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVR 460
++I +K+T AGQ+TRFKAFV D NGH+ S EVATAIRGAIIL + S+
Sbjct: 13 IRIKSYKKKTHAGQQTRFKAFVVFRDYNGHV------SLEVATAIRGAIILDRSSIAIAW 66
Query: 461 RGYWGNKIXKLHTVPC 508
G+ GNKI K HTV C
Sbjct: 67 GGWSGNKIAKPHTVSC 82
>UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length
enriched library, clone:1200003H09 product:ribosomal
protein S2, full insert sequence; n=13; Eutheria|Rep:
Adult male lung cDNA, RIKEN full-length enriched
library, clone:1200003H09 product:ribosomal protein S2,
full insert sequence - Mus musculus (Mouse)
Length = 235
Score = 70.5 bits (165), Expect = 3e-11
Identities = 32/44 (72%), Positives = 36/44 (81%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
K + KEW+PVTKLGRLV++ KI L IYLFSLPIKE EIIDFF
Sbjct: 54 KAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFF 97
Score = 55.2 bits (127), Expect = 1e-06
Identities = 26/30 (86%), Positives = 26/30 (86%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFK 337
F LG SL D VLKIMPVQKQTRAGQRTRFK
Sbjct: 96 FFLGASLKDEVLKIMPVQKQTRAGQRTRFK 125
Score = 38.7 bits (86), Expect = 0.096
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = +1
Query: 511 VTGNCXSVTFRLIPAPRGTGI 573
VTG C SV RLIPAPRGTGI
Sbjct: 126 VTGRCGSVLVRLIPAPRGTGI 146
>UniRef50_UPI0000DC060C Cluster: UPI0000DC060C related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC060C UniRef100 entry -
Rattus norvegicus
Length = 206
Score = 70.1 bits (164), Expect = 3e-11
Identities = 43/85 (50%), Positives = 52/85 (61%)
Frame = +2
Query: 254 LGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIIL 433
LG +L D VLK +P QK TR GQ +KA GD NGH+ G+ EVA I+ IIL
Sbjct: 86 LGAALKDEVLKSLPEQKGTRVGQY--YKA----GDYNGHVITGLD---EVANTIQRVIIL 136
Query: 434 AKLSVLPVRRGYWGNKIXKLHTVPC 508
KL ++PV RGY G+K K HTV C
Sbjct: 137 TKLPIVPVWRGYCGSKTSKPHTVLC 161
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +3
Query: 147 PVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
P +KLG LV++ +I L IYLFSLPIKE EIID F
Sbjct: 51 PASKLGCLVKD-EIKSLGEIYLFSLPIKETEIIDIF 85
>UniRef50_Q8TBR1 Cluster: MGC27348 protein; n=1; Homo sapiens|Rep:
MGC27348 protein - Homo sapiens (Human)
Length = 172
Score = 69.7 bits (163), Expect = 4e-11
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIG 376
F LG SL D VLKIMPV+K+TRAGQRTRFKAFVAI D NG+ G
Sbjct: 24 FFLGASLKDEVLKIMPVRKETRAGQRTRFKAFVAIRDYNGYAG 66
Score = 40.3 bits (90), Expect = 0.031
Identities = 19/24 (79%), Positives = 19/24 (79%)
Frame = +3
Query: 183 KIDKLXSIYLFSLPIKEFEIIDFF 254
KI L IYLFSLPIKE EIIDFF
Sbjct: 2 KIKSLEEIYLFSLPIKESEIIDFF 25
Score = 37.5 bits (83), Expect = 0.22
Identities = 21/51 (41%), Positives = 26/51 (50%)
Frame = +1
Query: 355 RQQRSYWFXCEVQQGSRHCHSRRYYPC*AVSSTSPKRLLG*QDXKATHRPL 507
R Y EV QG H R ++P A+ +RLLG QD +A HRPL
Sbjct: 59 RDYNGYAGRVEVLQGGGRRHPRGHHPDQALHCHRAQRLLGEQDRQAPHRPL 109
>UniRef50_Q6CKL2 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome F of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 262
Score = 69.3 bits (162), Expect = 6e-11
Identities = 36/78 (46%), Positives = 54/78 (69%)
Frame = -3
Query: 499 GV*LSYLVTPVTSSDW*N*QLSKDNSASNGSGDFLAALHTXTNMTVVVANGNKCLETCAL 320
GV L+ + TPVTSSDW N QL D++ S+G+ +FL+ L+T T++TV V N + LE+ +L
Sbjct: 104 GVRLTQVGTPVTSSDWDNGQLGDDDTGSDGTSNFLSGLNTQTDVTVGVTNDDDSLESGSL 163
Query: 319 SGTCLFLYRHDLKNXIIQ 266
+ + L L R D+ N I+Q
Sbjct: 164 TSSGLLLDRLDVHNFILQ 181
Score = 32.3 bits (70), Expect = 8.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 248 INDLEFFDW*RKQVNALEFVDFSFANKTAEFGDRNP--LFLV 129
+NDLEF DW R Q + + D + +++ + G+ NP FLV
Sbjct: 187 VNDLEFLDWQRVQEDFFDGRDLAGLHQSTQLGNWNPTLFFLV 228
>UniRef50_Q3LVZ1 Cluster: Ribosomal protein S2; n=1; Bigelowiella
natans|Rep: Ribosomal protein S2 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 266
Score = 68.9 bits (161), Expect = 8e-11
Identities = 34/97 (35%), Positives = 59/97 (60%)
Frame = +2
Query: 212 VFFTNQRIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKC 391
+FF N ++ + L G SL V++ + V + T++G++ + K V +GD +GH+G GVK
Sbjct: 92 IFFHNNKLVN--ILFGKSLKYKVIQNLMVSRLTKSGRQYKKKVAVLVGDLDGHVGLGVKS 149
Query: 392 SKEVATAIRGAIILAKLSVLPVRRGYWGNKIXKLHTV 502
S + I+ A+ AKL++ +RRGYW + K +T+
Sbjct: 150 SMDSKAGIKAALRKAKLAITKIRRGYWEIEEGKPNTI 186
>UniRef50_Q16TN2 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 181
Score = 67.7 bits (158), Expect = 2e-10
Identities = 37/87 (42%), Positives = 56/87 (64%)
Frame = -3
Query: 508 ARDGV*LSYLVTPVTSSDW*N*QLSKDNSASNGSGDFLAALHTXTNMTVVVANGNKCLET 329
A GV + LVTPV S+ N QL +D+S ++G G FLAAL T++ V V +G++ LE
Sbjct: 20 AGHGVGFTDLVTPVASTHRNNGQLGQDDSPTDGGGHFLAALDAQTDVAVAVTDGDEGLEA 79
Query: 328 CALSGTCLFLYRHDLKNXIIQGRAEKK 248
L+GT L L HDL++ ++Q A+++
Sbjct: 80 RTLTGTGLLLDGHDLQHFVLQRAAQEE 106
Score = 39.9 bits (89), Expect = 0.041
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 257 REEINDLEFFDW*RKQVNALEFVDFSFANKTAEFGDRNPLFLVFL 123
+EEI+DLE F+ R QV+ L+ D + A++ + G NP VFL
Sbjct: 104 QEEIDDLELFNGQRVQVDLLQGADLAIAHQATQLGHWNPFLRVFL 148
>UniRef50_Q6LXD3 Cluster: 30S ribosomal protein S5P; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S5P -
Methanococcus maripaludis
Length = 225
Score = 67.7 bits (158), Expect = 2e-10
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P L + VL + VQ+ ++G+R R++A V +G+ NG++G G+ SKEV AIR AI AK
Sbjct: 55 PDLEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAK 114
Query: 440 LSVLPVR--RGYWGNKIXKLHTVP 505
LS++ VR G W H++P
Sbjct: 115 LSLIKVRVGCGSWECGCGSPHSIP 138
Score = 36.7 bits (81), Expect = 0.39
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
K + + W P T++GR+V+EG I + I LP+ E EI+D
Sbjct: 10 KFNTEAWEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVD 51
>UniRef50_Q673Q8 Cluster: Ribosomal protein S5; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein S5 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 202
Score = 64.9 bits (151), Expect = 1e-09
Identities = 29/69 (42%), Positives = 46/69 (66%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P L+D VL + +Q+ T +G+R RF +G+++G++G + KEVA+ IR AI AK
Sbjct: 31 PGLDDDVLAVNMIQRMTDSGRRVRFNVLCVVGNSDGYVGLAICKGKEVASTIRKAIDKAK 90
Query: 440 LSVLPVRRG 466
L+++PV RG
Sbjct: 91 LNMIPVMRG 99
>UniRef50_UPI0000DBFACC Cluster: UPI0000DBFACC related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBFACC UniRef100 entry -
Rattus norvegicus
Length = 172
Score = 63.7 bits (148), Expect = 3e-09
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = +2
Query: 299 QKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKL 442
QKQT+ GQ+ R K F GD NGH+G G+KCSKEVATA +G + +L
Sbjct: 1 QKQTQTGQKNRLKTFCCYGDYNGHVGLGIKCSKEVATAFQGLWVKMQL 48
>UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8;
Eutheria|Rep: ribosomal protein S2 - Rattus norvegicus
Length = 233
Score = 63.7 bits (148), Expect = 3e-09
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
K + KEW+P TKLG LV++ KI L IYLFSLPIK EIIDFF
Sbjct: 54 KAEDKEWIPFTKLGHLVKDMKIKSLEEIYLFSLPIKGSEIIDFF 97
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFK 337
F LG SL + VLK MPVQKQTRAGQ TRFK
Sbjct: 96 FFLGASLKNEVLKTMPVQKQTRAGQWTRFK 125
Score = 33.9 bits (74), Expect = 2.7
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +1
Query: 511 VTGNCXSVTFRLIPAPRGTGI 573
VTG C SV RL APRGTGI
Sbjct: 126 VTGRCGSVLVRLFSAPRGTGI 146
>UniRef50_A0E2R7 Cluster: Chromosome undetermined scaffold_75, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_75,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 327
Score = 63.7 bits (148), Expect = 3e-09
Identities = 37/79 (46%), Positives = 50/79 (63%)
Frame = +2
Query: 182 KNRQTXEHLLVFFTNQRIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDN 361
K+ +T + +I DH FL +L + L I PVQKQT AGQ+TRFKA+V +GD+
Sbjct: 80 KSLETIFQFSIPIKEYQIVDH-FL--KTLKEEPLAIGPVQKQTCAGQKTRFKAYVVVGDS 136
Query: 362 NGHIGXGVKCSKEVATAIR 418
+ HIG G K +KEV AI+
Sbjct: 137 HQHIGLGWKSAKEVQGAIQ 155
Score = 61.7 bits (143), Expect = 1e-08
Identities = 25/41 (60%), Positives = 35/41 (85%)
Frame = +3
Query: 132 QKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
++EWVP+TKLGRLV+ GKI L +I+ FS+PIKE++I+D F
Sbjct: 61 EQEWVPLTKLGRLVKGGKIKSLETIFQFSIPIKEYQIVDHF 101
>UniRef50_Q8U017 Cluster: 30S ribosomal protein S5P; n=34;
Archaea|Rep: 30S ribosomal protein S5P - Pyrococcus
furiosus
Length = 236
Score = 63.7 bits (148), Expect = 3e-09
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSV 448
N VL I + T +G+R RF+ A+G+ +G++G G+ KEV AIR AI AKL++
Sbjct: 62 NQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNI 121
Query: 449 LPVRR--GYWGNKIXKLHTVP 505
+ ++R G W + + H+VP
Sbjct: 122 IEIKRGCGSWECRCRRPHSVP 142
Score = 40.3 bits (90), Expect = 0.031
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +3
Query: 138 EWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
EW P TKLG +V+EG+I + I+ IKE EIID
Sbjct: 15 EWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIID 51
>UniRef50_A7DRN6 Cluster: Ribosomal protein S5; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S5
- Candidatus Nitrosopumilus maritimus SCM1
Length = 238
Score = 62.5 bits (145), Expect = 7e-09
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P L V+ + +QK T GQ TRFKA VA G+ NG++G G SK++ AI A A
Sbjct: 85 PDLKSEVVDVGIIQKMTSNGQSTRFKAIVATGNENGYLGIGQGKSKQMRIAIEKATNAAY 144
Query: 440 LSVLPVRR--GYWGNKIXKLHTVP 505
L+V P++ G W + + H+VP
Sbjct: 145 LNVNPIKMGCGSWECRCDQKHSVP 168
>UniRef50_Q9UX87 Cluster: 30S ribosomal protein S5P; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S5P -
Sulfolobus solfataricus
Length = 214
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +2
Query: 251 LLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAII 430
+L P L V+ I VQKQT AG+ +R+K V +G+ +G++ G +K++ AI+ AI
Sbjct: 49 VLLPKLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIR 108
Query: 431 LAKLSVLPVRR--GYWGNKIXKLHTVP 505
AK++++PVRR G W + H++P
Sbjct: 109 DAKMNIIPVRRGCGSWQCTCGEPHSLP 135
Score = 41.9 bits (94), Expect = 0.010
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 135 KEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
+EW P T +G LV+EGKI + ++ +LPI E EI+D
Sbjct: 11 EEWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVD 48
>UniRef50_Q6L1A7 Cluster: 30S ribosomal protein S5P; n=7;
Archaea|Rep: 30S ribosomal protein S5P - Picrophilus
torridus
Length = 221
Score = 61.3 bits (142), Expect = 2e-08
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P L D V+ I Q+ T +G+R + +G+ NG++G G +KE A AI+ AI AK
Sbjct: 44 PDLKDEVINIERAQRMTDSGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAK 103
Query: 440 LSVLPVRR--GYWGNKIXKLHTVP 505
L+++ ++R G W K HT+P
Sbjct: 104 LNIIEIKRGCGSWECGCGKPHTLP 127
Score = 42.7 bits (96), Expect = 0.006
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 135 KEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDF 251
+EW P T+LGRLV G+I + LP+KE++I+D+
Sbjct: 3 EEWTPRTELGRLVANGEIKTISEALHSKLPLKEYQIVDY 41
>UniRef50_P26815 Cluster: 30S ribosomal protein S5P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S5P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 212
Score = 58.8 bits (136), Expect = 8e-08
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 254 LGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIIL 433
L P L D VL I VQ+ T +G+R +F+ VA+G+ +G IG +V AI+ AI +
Sbjct: 44 LVPDLEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDI 103
Query: 434 AKLSVLPVRR--GYWGNKIXKLHTV 502
AKL+++ V R G W + HTV
Sbjct: 104 AKLNIIDVSRGCGSWECGCGRPHTV 128
Score = 38.3 bits (85), Expect = 0.13
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 141 WVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
W P T+LG+ V EG+ID + LP+KE E++D
Sbjct: 7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVD 42
>UniRef50_A0RUE7 Cluster: 30S ribosomal protein S5P; n=1;
Cenarchaeum symbiosum|Rep: 30S ribosomal protein S5P -
Cenarchaeum symbiosum
Length = 219
Score = 58.8 bits (136), Expect = 8e-08
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P L V+ + +QK T GQ TRFKA VA G+ NG++G G +K++ AI A A
Sbjct: 66 PDLKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQAL 125
Query: 440 LSVLPVRR--GYWGNKIXKLHTVP 505
L+V P++ G W + + H+VP
Sbjct: 126 LNVGPIKLGCGSWECRCDQKHSVP 149
>UniRef50_UPI0000E20F35 Cluster: PREDICTED: similar to ribosomal
protein S2; n=1; Pan troglodytes|Rep: PREDICTED: similar
to ribosomal protein S2 - Pan troglodytes
Length = 223
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAI 427
FLLG L D VLK+M VQKQ +AG+R RFK V I D N ++ GV+ KE+ A+
Sbjct: 157 FLLGVPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTN 216
Query: 428 ILAKLSV 448
+L+ + V
Sbjct: 217 VLSIILV 223
Score = 35.9 bits (79), Expect = 0.68
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 171 VREGKIDKLXSIYLFSLPIKEFEIIDFFSARP 266
V++ K+ L +YLFSLPIKEFE+ DF P
Sbjct: 132 VKDMKMKSL-KVYLFSLPIKEFEVTDFLLGVP 162
>UniRef50_A7D107 Cluster: Ribosomal protein S5; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S5 -
Halorubrum lacusprofundi ATCC 49239
Length = 265
Score = 58.0 bits (134), Expect = 1e-07
Identities = 28/69 (40%), Positives = 44/69 (63%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P L D VL I VQ+ T +G+R +F+ VA+G+ +G++G +V AI+ AI +AK
Sbjct: 97 PGLEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGYLGYAQARDDQVGGAIQKAIDVAK 156
Query: 440 LSVLPVRRG 466
L+++ V RG
Sbjct: 157 LNIIEVDRG 165
Score = 35.9 bits (79), Expect = 0.68
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 141 WVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
W P T+LGR V+ G I + LP+KE EI+D
Sbjct: 58 WEPRTRLGRKVQNGDISSMEQALDSGLPLKEAEIVD 93
>UniRef50_UPI0000D62CF0 Cluster: UPI0000D62CF0 related cluster; n=1;
Mus musculus|Rep: UPI0000D62CF0 UniRef100 entry - Mus
musculus
Length = 215
Score = 57.6 bits (133), Expect = 2e-07
Identities = 42/88 (47%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAI 427
F L SL D VLKI+P+ + R Q TRF +F I + GH G GVKCSK+V TA+ +
Sbjct: 28 FFLEASLKDKVLKIIPLSR-FRNDQWTRFNSFDTI-NYGGHNGIGVKCSKKVGTAVGLSS 85
Query: 428 ILAKL-SVLPVRRGYWGNKIXKLHTVPC 508
+ L S LP R Y GN I K T PC
Sbjct: 86 WSSFLSSCLP--RDYCGNNIRK-PTYPC 110
Score = 33.9 bits (74), Expect = 2.7
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +3
Query: 144 VPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
+PVTKLG LV++ KI L P+KEFEI DFF
Sbjct: 1 IPVTKLGCLVKDIKIKYL--------PVKEFEINDFF 29
>UniRef50_UPI000057EB46 Cluster: UPI000057EB46 related cluster; n=1;
Bos taurus|Rep: UPI000057EB46 UniRef100 entry - Bos
Taurus
Length = 258
Score = 57.6 bits (133), Expect = 2e-07
Identities = 34/72 (47%), Positives = 45/72 (62%)
Frame = +2
Query: 293 PVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 472
P+ KQT Q+TRFKA V +G + GH+ G+K S EV AIILAKLS++PV
Sbjct: 95 PLIKQTCTDQQTRFKASVTVG-SYGHVSLGIKYSMEV------AIILAKLSIIPVETATG 147
Query: 473 GNKIXKLHTVPC 508
G ++ + H VPC
Sbjct: 148 GKRL-EPHMVPC 158
Score = 41.1 bits (92), Expect = 0.018
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 132 QKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFFSARP 266
+ +W+P+TKLG LV+E KI L IY FSL + + F P
Sbjct: 51 EDKWLPITKLGCLVKEMKIKSLEEIYFFSLLSRNLRSLTFSWEHP 95
Score = 35.9 bits (79), Expect = 0.68
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTG 570
P VTG C S+ LIPAPRGTG
Sbjct: 157 PCRVTGRCGSLLVHLIPAPRGTG 179
>UniRef50_UPI0000D9EF8A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 40S ribosomal protein S2 - Macaca mulatta
Length = 181
Score = 56.0 bits (129), Expect = 6e-07
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIK 230
K + KEW+PVTKLGRLV++ KI L IYLFSLPIK
Sbjct: 54 KAEDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIK 89
>UniRef50_UPI0000DC004A Cluster: UPI0000DC004A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC004A UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 55.6 bits (128), Expect = 8e-07
Identities = 38/92 (41%), Positives = 45/92 (48%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAI 427
F LG L D VL+ M Q Q RTR K F + + V CSKEV TA + AI
Sbjct: 55 FFLGEHLKDEVLRTMLAQNQ-----RTRIKVFFFLTIRSPMTTL-VNCSKEVGTAAQRAI 108
Query: 428 ILAKLSVLPVRRGYWGNKIXKLHTVPCXSPAT 523
L + + GY GNKI HT+PC AT
Sbjct: 109 TLLSF-LFSTQTGYKGNKIGNPHTIPCDVTAT 139
>UniRef50_O15578 Cluster: Ribosomal protein S2; n=1; Entamoeba
histolytica|Rep: Ribosomal protein S2 - Entamoeba
histolytica
Length = 88
Score = 55.2 bits (127), Expect = 1e-06
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +3
Query: 141 WVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
W PVTKLGRLV++GK+ + I+ F + IKEFEI+D F
Sbjct: 35 WTPVTKLGRLVKDGKVKSIDQIFEFGIKIKEFEIVDHF 72
>UniRef50_Q7XYL2 Cluster: Ribosomal protein rpS5; n=1; Bigelowiella
natans|Rep: Ribosomal protein rpS5 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 219
Score = 54.0 bits (124), Expect = 2e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 257 GPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILA 436
GP + VL++ + K + G+ F+A VA+GD NG IG G +KEV A+ A + A
Sbjct: 68 GPRFEEKVLQVRRITKVVKGGKNMGFRALVAVGDKNGKIGLGCASAKEVMVAVEKASMEA 127
Query: 437 KLSVL--PVRRGY 469
K + + P+ + Y
Sbjct: 128 KKTAITVPITKDY 140
>UniRef50_P59123 Cluster: 30S ribosomal protein S5; n=22;
Bacteria|Rep: 30S ribosomal protein S5 - Oceanobacillus
iheyensis
Length = 167
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +2
Query: 266 LNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLS 445
L + V+ + V K + G+R RF A V +GD NGH+G G ++EV AI+ A+ AK +
Sbjct: 12 LEERVVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIKKAVDDAKKN 71
Query: 446 VLPV 457
++ V
Sbjct: 72 LISV 75
>UniRef50_Q74MD4 Cluster: 30S ribosomal protein S5P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S5P -
Nanoarchaeum equitans
Length = 231
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +2
Query: 299 QKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVRR--GYW 472
QK+T G +TR++ +GD +GH+G G+ S ++ A AI AKL+++ V R G W
Sbjct: 72 QKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSW 131
Query: 473 GNKIXKLHTVP 505
H++P
Sbjct: 132 ECACGAPHSIP 142
Score = 42.3 bits (95), Expect = 0.008
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3
Query: 135 KEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
+EW P TKLGRLV+EGKI + I I+E EI+D
Sbjct: 5 EEWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVD 42
>UniRef50_Q9PQP3 Cluster: 30S ribosomal protein S5; n=2;
Firmicutes|Rep: 30S ribosomal protein S5 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 203
Score = 50.8 bits (116), Expect = 2e-05
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +2
Query: 263 SLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKL 442
+ + V+KI + K T+ G+ RF A V IGD NG +G G+ S EV AI+ AI A
Sbjct: 48 NFEERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANN 107
Query: 443 SVLPVRR 463
+++ V++
Sbjct: 108 NLIKVKQ 114
>UniRef50_Q6YR05 Cluster: 30S ribosomal protein S5; n=22;
Bacteria|Rep: 30S ribosomal protein S5 - Onion yellows
phytoplasma
Length = 171
Score = 49.2 bits (112), Expect = 7e-05
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +2
Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
P L + V+KI + K + G R RF A V +GD G IG +KE+ AI+ A+ AK
Sbjct: 13 PLLEEKVVKINRITKVVKGGARFRFSALVVVGDKKGQIGFATAKAKEIVEAIKKALEKAK 72
Query: 440 LSVLPV 457
++ +
Sbjct: 73 KQLVRI 78
>UniRef50_UPI0000D9ACAD Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 40S ribosomal protein S2 - Macaca mulatta
Length = 170
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/62 (45%), Positives = 36/62 (58%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAI 427
FLL L D VLK+M V+KQ AG+ RFK V I N ++ GV+ KE+ A+ I
Sbjct: 23 FLLEVPLKDKVLKLMFVKKQPEAGRWIRFKVIVTIRYCNDNVSLGVERPKELLIAVCRTI 82
Query: 428 IL 433
IL
Sbjct: 83 IL 84
Score = 32.7 bits (71), Expect = 6.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 192 KLXSIYLFSLPIKEFEIIDFFSARP 266
K +YLFS PIKEFE+ DF P
Sbjct: 4 KSLKVYLFSRPIKEFEVTDFLLEVP 28
>UniRef50_Q7Y258 Cluster: Ribosomal protein S5 precursor; n=1;
Chlamydomonas reinhardtii|Rep: Ribosomal protein S5
precursor - Chlamydomonas reinhardtii
Length = 673
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/67 (32%), Positives = 40/67 (59%)
Frame = +2
Query: 257 GPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILA 436
G + + ++++ V K + G+ F+ IG+ NG +G G + +EVATA++ A++ A
Sbjct: 510 GENWQERIIELSRVTKVVKGGKLMGFRCTAIIGNGNGLVGVGCQAGREVATAVKRALVDA 569
Query: 437 KLSVLPV 457
K SV+ V
Sbjct: 570 KKSVVRV 576
>UniRef50_Q8EUD0 Cluster: 30S ribosomal protein S5; n=3;
Mycoplasma|Rep: 30S ribosomal protein S5 - Mycoplasma
penetrans
Length = 234
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +2
Query: 266 LNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLS 445
L + ++ + + K T+ G+ RF A IGD G++G G+ S EV AIR A+ AK +
Sbjct: 78 LEEKIVGVKKISKTTKGGRNMRFSALAVIGDRKGNVGFGLGKSIEVPVAIRKALKSAKNN 137
Query: 446 VLPVR 460
+ V+
Sbjct: 138 MYKVK 142
>UniRef50_O15579 Cluster: Ribosomal protein S2; n=1; Entamoeba
histolytica|Rep: Ribosomal protein S2 - Entamoeba
histolytica
Length = 136
Score = 47.6 bits (108), Expect = 2e-04
Identities = 19/39 (48%), Positives = 29/39 (74%)
Frame = +3
Query: 147 PVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFFSAR 263
PVTKLGRLV++GK+ + I+ F + IKE++I+D +R
Sbjct: 36 PVTKLGRLVKDGKVKSIDQIFEFGIKIKEYQIVDHLLSR 74
Score = 42.3 bits (95), Expect = 0.008
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +2
Query: 266 LNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGH 370
L + V+ I VQKQT G+ R KA VAIGD+NGH
Sbjct: 75 LKEEVMTIDQVQKQTSRGKEPRLKASVAIGDHNGH 109
>UniRef50_Q8RIH3 Cluster: 30S ribosomal protein S5; n=3;
Fusobacterium nucleatum|Rep: 30S ribosomal protein S5 -
Fusobacterium nucleatum subsp. nucleatum
Length = 164
Score = 46.0 bits (104), Expect = 6e-04
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ +LKI V K T+ G+ F A+GD G IG G+ + V AIR AI AK +++
Sbjct: 11 EKLLKISRVSKTTKGGRTISFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIV 70
Query: 452 PV 457
+
Sbjct: 71 KI 72
>UniRef50_P93014 Cluster: 30S ribosomal protein S5, chloroplast
precursor; n=12; cellular organisms|Rep: 30S ribosomal
protein S5, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 303
Score = 46.0 bits (104), Expect = 6e-04
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ V+++ V K + G++ +F+A V +GD G++G G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 452 PV 457
V
Sbjct: 209 QV 210
>UniRef50_Q9X1J2 Cluster: 30S ribosomal protein S5; n=6;
Bacteria|Rep: 30S ribosomal protein S5 - Thermotoga
maritima
Length = 178
Score = 45.6 bits (103), Expect = 8e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ +++I K T+ G+ F+ +G+ NG +G G+ ++EV AIR AI AK +++
Sbjct: 17 EKIIEIRRTSKVTKGGKNLSFRVVAIVGNKNGKVGLGIGKAREVPEAIRKAISAAKRNIV 76
Query: 452 PV 457
V
Sbjct: 77 EV 78
>UniRef50_Q9RSL1 Cluster: 30S ribosomal protein S5; n=2;
Deinococcus|Rep: 30S ribosomal protein S5 - Deinococcus
radiodurans
Length = 196
Score = 45.6 bits (103), Expect = 8e-04
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ +L + K + G+R RF A V +GD NG +G G+ +KEV AI A +A+ +++
Sbjct: 19 EKMLFVNRTSKTYQGGRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAVARKNMI 78
Query: 452 --PVRRG 466
PV G
Sbjct: 79 TVPVENG 85
>UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 -
Mus musculus (Mouse); n=3; Murinae|Rep: RBM27_MOUSE
Isoform 2 of Q5SFM8 - Mus musculus (Mouse) - Rattus
norvegicus
Length = 266
Score = 44.8 bits (101), Expect = 0.001
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = +2
Query: 248 FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAI 415
F L SL D +IMPVQ QT R FK FV+I D + H+ KCSK+ ATAI
Sbjct: 95 FFLRTSLRD---EIMPVQTQTWLPSRP-FKDFVSIRDYSSHVDLDDKCSKKTATAI 146
>UniRef50_A0T0Y9 Cluster: Chloroplast 30S ribosomal protein S5; n=3;
cellular organisms|Rep: Chloroplast 30S ribosomal
protein S5 - Thalassiosira pseudonana (Marine diatom)
Length = 179
Score = 44.8 bits (101), Expect = 0.001
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGA 424
+ ++KI V K T+ G++ F+A V IGD NG +G GV +++V A + A
Sbjct: 28 ERLIKISRVTKVTKGGKKLSFRAVVVIGDENGKVGVGVGKAEDVVNAFKKA 78
>UniRef50_A7QPU4 Cluster: Chromosome chr10 scaffold_138, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_138, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 340
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ V+++ V K + G++ F+A V +GD G +G GV +KEV A++ + A+ +++
Sbjct: 186 ERVVQVRRVTKVVKGGKQLHFRAVVVVGDKQGQVGVGVGKAKEVIAAVQKSATNARRNII 245
Query: 452 PV 457
V
Sbjct: 246 TV 247
>UniRef50_P59122 Cluster: 30S ribosomal protein S5; n=40;
Bacteria|Rep: 30S ribosomal protein S5 - Bifidobacterium
longum
Length = 233
Score = 44.4 bits (100), Expect = 0.002
Identities = 29/80 (36%), Positives = 39/80 (48%)
Frame = +2
Query: 224 NQRIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEV 403
N+R +H G L D V+ I V K + G+ F A V +GD NG +G G S+EV
Sbjct: 35 NRREENH----GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREV 90
Query: 404 ATAIRGAIILAKLSVLPVRR 463
AI + AK + V R
Sbjct: 91 PAAIAKGQLDAKKHMFSVPR 110
>UniRef50_Q5NQ48 Cluster: 30S ribosomal protein S5; n=155; cellular
organisms|Rep: 30S ribosomal protein S5 - Zymomonas
mobilis
Length = 233
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 257 GPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILA 436
G L + ++ I V K + G+R F A V +GD G +G G ++EV AI A A
Sbjct: 56 GEELIEKLVHINRVSKTVKGGKRFGFAALVVVGDGKGRVGFGHGKAREVPEAISKATAAA 115
Query: 437 KLSVL--PVRRG 466
K +++ P+R G
Sbjct: 116 KKTMIRVPLREG 127
>UniRef50_Q8TGP1 Cluster: Uncharacterized protein YGL123C-A; n=1;
Saccharomyces cerevisiae|Rep: Uncharacterized protein
YGL123C-A - Saccharomyces cerevisiae (Baker's yeast)
Length = 76
Score = 43.6 bits (98), Expect = 0.003
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = -3
Query: 253 KKSMISNSLIGKENK*MLXSLSIFPSRTRRPSLVTGTHSFWS 128
K SMI NSL GKE K + + I P+ T PSLVTGTH F S
Sbjct: 12 KVSMIWNSLTGKECKKISSMVVILPALTNLPSLVTGTHPFSS 53
>UniRef50_Q92QF3 Cluster: 30S ribosomal protein S5; n=203; cellular
organisms|Rep: 30S ribosomal protein S5 - Rhizobium
meliloti (Sinorhizobium meliloti)
Length = 189
Score = 43.2 bits (97), Expect = 0.004
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK--LS 445
D ++ I V K + G+R F A V +GD G +G G ++EV AIR A AK L
Sbjct: 24 DKLVAINRVAKVVKGGRRFGFAALVVVGDQKGRVGFGHGKAREVPEAIRKATEAAKRDLI 83
Query: 446 VLPVRRG 466
+P+R G
Sbjct: 84 FVPLRGG 90
>UniRef50_Q7NEG9 Cluster: 30S ribosomal protein S5; n=34; cellular
organisms|Rep: 30S ribosomal protein S5 - Gloeobacter
violaceus
Length = 223
Score = 42.3 bits (95), Expect = 0.008
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ V++I V K + G++ F+A + +GD NG +G GV + +V A++ + A+ +++
Sbjct: 68 ERVVQIRRVTKVVKGGKKLSFRAVIVVGDGNGRVGVGVGKANDVIGAVKKGVSDARKALI 127
Query: 452 PV 457
V
Sbjct: 128 RV 129
>UniRef50_O67563 Cluster: 30S ribosomal protein S5; n=5;
Bacteria|Rep: 30S ribosomal protein S5 - Aquifex
aeolicus
Length = 208
Score = 42.3 bits (95), Expect = 0.008
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +2
Query: 308 TRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPV 457
T+ G+R F V +GD GH+G G +KEV AI I AK +V+ V
Sbjct: 42 TKGGRRFSFSTLVVVGDRKGHVGFGHGKAKEVTLAIAKGIEKAKKNVIRV 91
>UniRef50_P66575 Cluster: 30S ribosomal protein S5; n=128;
Bacteria|Rep: 30S ribosomal protein S5 - Mycobacterium
bovis
Length = 220
Score = 41.5 bits (93), Expect = 0.014
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ V+ I V K + G+R F A V +GD NG +G G +KEV AI + A+ S
Sbjct: 44 ERVVAINRVSKVVKGGRRFSFTALVIVGDGNGMVGVGYGKAKEVPAAIAKGVEEARKSFF 103
Query: 452 PV 457
V
Sbjct: 104 RV 105
>UniRef50_Q9XD19 Cluster: 30S ribosomal protein S5; n=17;
Bacteria|Rep: 30S ribosomal protein S5 - Leptospira
interrogans
Length = 187
Score = 41.5 bits (93), Expect = 0.014
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSV 448
++ V+KI V K + G+R F A +GD G +G G + EV AIR +I AK +
Sbjct: 31 SEKVVKIDRVAKVVKGGRRFSFNALSVVGDQRGKVGIGFGKANEVPDAIRKSIESAKKHL 90
Query: 449 LPV 457
+ +
Sbjct: 91 VKI 93
>UniRef50_Q6AP53 Cluster: 30S ribosomal protein S5; n=8;
Bacteria|Rep: 30S ribosomal protein S5 - Desulfotalea
psychrophila
Length = 171
Score = 40.3 bits (90), Expect = 0.031
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 266 LNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
L + ++ I V K + G+R F A V +GD NG +G G+ + +V AIR + A+
Sbjct: 16 LIEKIVFINRVAKVVKGGRRFSFSAIVVVGDGNGKVGYGLGKANQVPEAIRKGVERAR 73
>UniRef50_P73304 Cluster: 30S ribosomal protein S5; n=30; cellular
organisms|Rep: 30S ribosomal protein S5 - Synechocystis
sp. (strain PCC 6803)
Length = 173
Score = 39.9 bits (89), Expect = 0.041
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ V++I V K + G++ F+A V +G+ G +G GV + +V A+R + K ++
Sbjct: 19 ERVIQIRRVSKVVKGGKKLSFRAIVVVGNETGQVGVGVGKAGDVIGAVRKGVADGKKQLI 78
Query: 452 PV 457
V
Sbjct: 79 EV 80
>UniRef50_Q5FFR5 Cluster: 30S ribosomal protein S5; n=5; canis
group|Rep: 30S ribosomal protein S5 - Ehrlichia
ruminantium (strain Gardel)
Length = 174
Score = 36.7 bits (81), Expect = 0.39
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSV 448
++ ++ + V K + G+R F V IGD G +G G+ EV+ A A+ A+ ++
Sbjct: 17 SELIVSVRRVAKVVKGGRRFSFSVLVVIGDEKGKVGCGIGKHLEVSEAKVKAVNAARKNM 76
Query: 449 LPV 457
+ V
Sbjct: 77 IRV 79
>UniRef50_Q5L704 Cluster: 30S ribosomal protein S5; n=7;
Chlamydiaceae|Rep: 30S ribosomal protein S5 -
Chlamydophila abortus
Length = 165
Score = 36.3 bits (80), Expect = 0.51
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 266 LNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIR 418
L + VL + K + G++ F A + +GD G +G G + E+ AIR
Sbjct: 13 LEEKVLVVNRCSKVVKGGRKFSFSALILVGDGKGRLGYGFAKANELTDAIR 63
>UniRef50_Q4EF76 Cluster: Putative uncharacterized protein; n=1;
Listeria monocytogenes str. 4b H7858|Rep: Putative
uncharacterized protein - Listeria monocytogenes str. 4b
H7858
Length = 77
Score = 35.9 bits (79), Expect = 0.68
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -3
Query: 427 NSASNGSGDFLAALHTXTNMTVVVANGNKCLET 329
NS ++ +FL T TNMT+ V+N NKC ET
Sbjct: 25 NSFTDSIWNFLRFTSTETNMTIFVSNNNKCCET 57
>UniRef50_Q6KI38 Cluster: 30S ribosomal protein S5; n=9;
Firmicutes|Rep: 30S ribosomal protein S5 - Mycoplasma
mobile
Length = 243
Score = 35.9 bits (79), Expect = 0.68
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ ++ I V + G+R F A V +GD G +G G + EV AI+ A+ A+ +++
Sbjct: 91 EKIVNIARVTNVVKGGRRFSFAAVVVVGDKKGRVGYGHGKALEVPDAIKKAVKDAQNNLI 150
Query: 452 PV 457
V
Sbjct: 151 RV 152
>UniRef50_UPI000023F324 Cluster: hypothetical protein FG00649.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00649.1 - Gibberella zeae PH-1
Length = 504
Score = 35.5 bits (78), Expect = 0.89
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 296 VQKQTRAGQRTRFKAFVAI-GDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVRR 463
V QTR G + R + VAI G+ NG +G G+ S E A A +LA ++ PVRR
Sbjct: 350 VSNQTRLG-KVRSTSVVAIAGNGNGRLGLGMAKSTEPGVAEETAQMLAIRNMKPVRR 405
>UniRef50_A7CZB7 Cluster: Ribosomal protein S5; n=1; Opitutaceae
bacterium TAV2|Rep: Ribosomal protein S5 - Opitutaceae
bacterium TAV2
Length = 231
Score = 35.5 bits (78), Expect = 0.89
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 266 LNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIR 418
L + V+ I K + G+R F A +GD NG +G G + EV AI+
Sbjct: 71 LVEKVVFINRCAKVVKGGRRFSFSALAVVGDKNGKVGIGYGKANEVPDAIK 121
>UniRef50_A6PPX8 Cluster: Ribosomal protein S5; n=4; Bacteria|Rep:
Ribosomal protein S5 - Victivallis vadensis ATCC BAA-548
Length = 181
Score = 35.5 bits (78), Expect = 0.89
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIR 418
++ V+ I K + G+ F A V +GD G +G G + EV+ AIR
Sbjct: 16 DESVISINRSAKVVKGGKNFSFGALVVVGDRKGRVGYGYGKANEVSDAIR 65
>UniRef50_A4R1A2 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 414
Score = 35.1 bits (77), Expect = 1.2
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 296 VQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVRR 463
V QTR G+ + +G+ NG IG G S + A+ A ++A +++P+RR
Sbjct: 260 VTNQTRLGKVQSWHIMTIVGNGNGRIGLGEAKSVDGQIAMHKARLMAIKNMVPIRR 315
>UniRef50_Q2GVX5 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 407
Score = 33.5 bits (73), Expect = 3.6
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 296 VQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVRR 463
V QTR G+ + +G+ NG +G G S E + A A +LA ++ P+RR
Sbjct: 253 VANQTRLGKVQKASIMYVVGNGNGWLGIGEAKSTEPSIAGLKARLLAIRNMRPIRR 308
>UniRef50_Q9RS86 Cluster: Ribosomal protein S2-related protein; n=5;
Bacteria|Rep: Ribosomal protein S2-related protein -
Deinococcus radiodurans
Length = 472
Score = 33.1 bits (72), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 335 KAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 472
++ V IG + H G + +++VA A+RG + L V GYW
Sbjct: 2 RSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYW 47
>UniRef50_A7RP03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 270
Score = 33.1 bits (72), Expect = 4.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 263 SLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGA 424
+ + V+++ V T G++ +A V +G+ NG G GV + +AIR A
Sbjct: 151 NFDSVVVELRRVSNVTSGGKKRSLRALVVVGNRNGAAGFGVGKGRTPISAIRKA 204
>UniRef50_A2RAI1 Cluster: Remark: literature about the mitochondrial
ribosome structure: Pubmed 11279123. precursor; n=9;
Eurotiomycetidae|Rep: Remark: literature about the
mitochondrial ribosome structure: Pubmed 11279123.
precursor - Aspergillus niger
Length = 444
Score = 32.7 bits (71), Expect = 6.3
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 281 LKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVLPVR 460
L I V QTR G+ G+ NG +G G+ S E+ A + A A ++ PV
Sbjct: 260 LVIRRVSNQTRLGKVPSMSVVTVAGNQNGLMGIGIAKSDEIIDACQQARARAVKNMQPVP 319
Query: 461 R 463
R
Sbjct: 320 R 320
>UniRef50_P33759 Cluster: 37S ribosomal protein S5, mitochondrial
precursor; n=6; Saccharomycetales|Rep: 37S ribosomal
protein S5, mitochondrial precursor - Saccharomyces
cerevisiae (Baker's yeast)
Length = 307
Score = 32.3 bits (70), Expect = 8.3
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 296 VQKQTRAGQRTRFKAFVAIGDNNGHIGXGV-KCSKEVATAI 415
V QT G+ F A V +GD NG +G G K +E++ AI
Sbjct: 154 VSNQTGKGKIASFYALVVVGDKNGMVGLGEGKSREEMSKAI 194
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,023,452
Number of Sequences: 1657284
Number of extensions: 8626149
Number of successful extensions: 18859
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 18352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18851
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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