Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0852
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   1.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.9  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 195 LXSIYLFSLPIKEFEIIDFFSARP*MMXFLRSCLYRN 305
           L ++Y     + E  II+F       M F  +C+Y N
Sbjct: 153 LFTVYYIYYSVHEASIINFGYTLAKFMIFTSTCIYTN 189


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 435 LSCQFYQSEEVTGVTRXESYTPSLAXHR 518
           +SC  YQ+ E   V   ES  P +   R
Sbjct: 369 VSCTHYQNPEYISVVNPESPYPQIGSER 396


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 433 KDNSASNGSGDFLAALHTXTNMTVVVANGNK 341
           K NS +NGS D +      ++    + NG+K
Sbjct: 279 KPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 191 VDFSFANKTAEFGDRN 144
           VDF F N +A F D N
Sbjct: 82  VDFLFDNFSAAFQDHN 97


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 191 VDFSFANKTAEFGDRN 144
           VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 191 VDFSFANKTAEFGDRN 144
           VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,241
Number of Sequences: 336
Number of extensions: 2065
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)