Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0852
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   138   4e-34

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  138 bits (335), Expect = 4e-34
 Identities = 59/82 (71%), Positives = 72/82 (87%)
 Frame = +2

Query: 260 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAK 439
           P LND V+K++PVQKQTRAGQRTRFKAFV IGD++GH+G G+KC+KEVATAIRGAII+ K
Sbjct: 73  PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGK 132

Query: 440 LSVLPVRRGYWGNKIXKLHTVP 505
           LS++P+RRGYWG  +   HTVP
Sbjct: 133 LSIMPIRRGYWGTALGDPHTVP 154



 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 29/47 (61%), Positives = 40/47 (85%)
 Frame = +3

Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFFSAR 263
           ++++KEWVPVTKLGRLV+ GKI  +  IYL+SLPIKE++I+D+F  R
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPR 74



 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +1

Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
           P+ V+G C SVT RL+PAPRG G+
Sbjct: 154 PVKVSGKCGSVTVRLVPAPRGAGL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,693
Number of Sequences: 5004
Number of extensions: 35179
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)