Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0852
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 153 7e-38
07_01_0756 + 5819367-5820038,5820847-5821005 151 5e-37
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 46 3e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 39 0.002
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 30 1.5
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10... 28 4.6
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 153 bits (372), Expect = 7e-38
Identities = 70/85 (82%), Positives = 76/85 (89%)
Frame = +2
Query: 254 LGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIIL 433
L P L D V+KI PVQKQTRAGQRTRFKAFV +GDNNGH+G GVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 434 AKLSVLPVRRGYWGNKIXKLHTVPC 508
AKLSV+PVRRGYWGNKI + HTVPC
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPHTVPC 165
Score = 61.3 bits (142), Expect = 5e-10
Identities = 23/42 (54%), Positives = 36/42 (85%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++++++WVPVTKLGRLV+EG+ K+ IYL SLP+KE +I++
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE 79
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SVT R++PAPRG+GI
Sbjct: 164 PCKVTGKCGSVTVRMVPAPRGSGI 187
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 151 bits (365), Expect = 5e-37
Identities = 69/85 (81%), Positives = 75/85 (88%)
Frame = +2
Query: 254 LGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIIL 433
L P L D V+KI PVQKQTRAGQRTRFKAFV +GD +GH+G GVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 434 AKLSVLPVRRGYWGNKIXKLHTVPC 508
AKLSV+PVRRGYWGNKI K HTVPC
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPHTVPC 168
Score = 61.3 bits (142), Expect = 5e-10
Identities = 24/42 (57%), Positives = 36/42 (85%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++++++WVPVTKLGRLV+E KI K+ IYL SLP+KE +I++
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE 82
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SVT R++PAPRG+GI
Sbjct: 167 PCKVTGKCGSVTVRMVPAPRGSGI 190
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSV 448
++ V+++ V K + G++ F+A V +GD GH+G GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 449 LPV 457
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 341 FVAIGDNNGHIGXGVKCSKEVATAIRGAIILA 436
FV +GD + HI GVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 403 DFLAALHTXTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNXIIQGRAEKKSMISNS 230
+F+A LHT +M V +E C LS F+ +HD I +M+S S
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHDTDCCAISHAWAMSTMLSCS 712
>03_01_0013 -
105281-105552,105762-105838,105839-106524,106655-106738,
106914-107114,107202-107309,107766-107855,108505-108551,
109096-109276,110010-110135,110220-110386,110877-111072
Length = 744
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 280 NXIIQGRAEKKSMISNSLIGKENK*MLXSLSIFPSRTRRPSLVTGTHSFWSS 125
N +I RAE+K +S+S+IG+E+ + + S++ G H F +S
Sbjct: 399 NNVIMRRAERKLKLSHSVIGEEDATYGKGKYVENEASDMRSIIFGLHLFDTS 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,858
Number of Sequences: 37544
Number of extensions: 251784
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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