Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0852
(573 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 5e-41
SB_52533| Best HMM Match : rve (HMM E-Value=2) 30 1.5
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 2.0
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 2.0
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 3.6
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 3.6
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 4.7
SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24) 28 4.7
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4) 28 6.2
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 6.2
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 28 6.2
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 8.2
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 164 bits (398), Expect = 5e-41
Identities = 80/107 (74%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Frame = +2
Query: 191 QTXEHLLVF-FTNQRIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 367
+T EH+ +F + F LG +L D VLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 368 HIGXGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIXKLHTVPC 508
H+G GVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKI K HTVPC
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPC 130
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +3
Query: 141 WVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIIDFF 254
WVPVTKLGRLV++ KI L IYLFSLPIKEFEIIDFF
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFF 45
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C S RLIPAPRGTGI
Sbjct: 129 PCKVTGKCGSTRVRLIPAPRGTGI 152
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 227 QRIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXG 382
QR+R L N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 81 QRLRSKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 227 QRIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXG 382
QR+R L N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 141 QRLRGKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 415 NGSGDFLAALHTXTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNXI 272
N G LA + N+ +V NG K + C LS T L LY HDL +
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDLSEQL 151
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXG 382
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXG 382
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXG 382
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 269 NDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXG 382
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 319 TAHTFQGICCHWRQQRSYW 375
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)
Length = 338
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 328 CALSGTCLFLYRHDLKNXIIQGRAEKKSMISNSL 227
C LS T LY HDL + + + + +++ ++ NS+
Sbjct: 111 CVLSTTLFNLYLHDLSDSLRELQPQREGLVINSI 144
>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
Length = 174
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 136 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 246
KSG L ++F E +S+AF C LY +KN SL
Sbjct: 56 KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 317 GQRTRFKAFVAIGDNNGHIGXGVKCSKEVA 406
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 444 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 313
D+L+ IAP A SLL + P+++P A +AL ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 442 QLSKDNSASNGSGDFLAALHTXTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNXIIQG 263
++ + NS N D TNMT + + G CL + TC+ L DL N + +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 262 R 260
R
Sbjct: 293 R 293
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 442 QLSKDNSASNGSGDFLAALHTXTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNXIIQG 263
++ + NS N D TNMT + + G CL + TC+ L DL N + +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 262 R 260
R
Sbjct: 577 R 577
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,408
Number of Sequences: 59808
Number of extensions: 296984
Number of successful extensions: 661
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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