Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0852
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   142   2e-34
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    27   7.2  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  142 bits (344), Expect = 2e-34
 Identities = 66/82 (80%), Positives = 72/82 (87%)
 Frame = +2

Query: 263 SLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKL 442
           +L D VLKI PVQKQT AGQRTRFKAFVAIGD+ GH+G GVKCSKEVATAIRGAI+ AKL
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156

Query: 443 SVLPVRRGYWGNKIXKLHTVPC 508
           +V+PVRRGYWGNKI   HTVPC
Sbjct: 157 AVVPVRRGYWGNKIGLPHTVPC 178



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/41 (73%), Positives = 32/41 (78%)
 Frame = +3

Query: 126 EDQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
           E + EW PVTKLGRLV+E KI  L  IYL SLPIKEFEIID
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID 92



 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 18/24 (75%), Positives = 18/24 (75%)
 Frame = +1

Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
           P  VTG C SV  RLIPAPRGTGI
Sbjct: 177 PCKVTGKCASVMVRLIPAPRGTGI 200


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 346 NKCLETCALSGTCLFLYR-HDLKNXIIQGRAEKKSMISNSLIGKEN 212
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 346 NKCLETCALSGTCLFLYR-HDLKNXIIQGRAEKKSMISNSLIGKEN 212
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 176 RRKNRQTXEHLLVFFTNQRIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFK-AFVAI 352
           R++ R T ++  +  T +RIR   F +  S    +L  +PV+K+    +  RF  A+++ 
Sbjct: 24  RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83

Query: 353 GDN 361
            DN
Sbjct: 84  LDN 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,158
Number of Sequences: 27780
Number of extensions: 211408
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)