Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0852
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 162 2e-40
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 162 2e-40
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 162 2e-40
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 162 2e-40
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 161 2e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 161 3e-40
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 46 2e-05
At3g01450.1 68416.m00069 expressed protein 29 2.2
At1g12640.1 68414.m01468 membrane bound O-acyl transferase (MBOA... 29 2.2
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.9
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.8
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 162 bits (393), Expect = 2e-40
Identities = 76/93 (81%), Positives = 83/93 (89%)
Frame = +2
Query: 230 RIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVAT 409
+I DH L+GP+L D V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G GVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 410 AIRGAIILAKLSVLPVRRGYWGNKIXKLHTVPC 508
AIRGAIILAKLSV+PVRRGYWGNKI K HTVPC
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPC 175
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +3
Query: 129 DQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++ +WVPVTKLGRLV + KI KL IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SVT R++PAPRG+GI
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGI 197
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 162 bits (393), Expect = 2e-40
Identities = 76/93 (81%), Positives = 83/93 (89%)
Frame = +2
Query: 230 RIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVAT 409
+I DH L+GP+L D V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G GVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 410 AIRGAIILAKLSVLPVRRGYWGNKIXKLHTVPC 508
AIRGAIILAKLSV+PVRRGYWGNKI K HTVPC
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPC 175
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +3
Query: 129 DQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++ +WVPVTKLGRLV + KI KL IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SVT R++PAPRG+GI
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGI 197
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 162 bits (393), Expect = 2e-40
Identities = 76/93 (81%), Positives = 83/93 (89%)
Frame = +2
Query: 230 RIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVAT 409
+I DH L+GP+L D V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G GVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 410 AIRGAIILAKLSVLPVRRGYWGNKIXKLHTVPC 508
AIRGAIILAKLSV+PVRRGYWGNKI K HTVPC
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPC 175
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +3
Query: 129 DQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++ +WVPVTKLGRLV + KI KL IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SVT R++PAPRG+GI
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGI 197
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 162 bits (393), Expect = 2e-40
Identities = 76/93 (81%), Positives = 83/93 (89%)
Frame = +2
Query: 230 RIRDH*FLLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVAT 409
+I DH L+GP+L D V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G GVKCSKEVAT
Sbjct: 85 QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142
Query: 410 AIRGAIILAKLSVLPVRRGYWGNKIXKLHTVPC 508
AIRGAIILAKLSV+PVRRGYWGNKI K HTVPC
Sbjct: 143 AIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPC 175
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +3
Query: 129 DQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++ +WVPVTKLGRLV + KI KL IYL SLP+KE++IID
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SVT R++PAPRG+GI
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGI 197
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 161 bits (392), Expect = 2e-40
Identities = 72/86 (83%), Positives = 80/86 (93%)
Frame = +2
Query: 251 LLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAII 430
L+GPSL D V+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+G GVKCSKEVATAIRGAII
Sbjct: 82 LVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAII 141
Query: 431 LAKLSVLPVRRGYWGNKIXKLHTVPC 508
LAKLSV+P+RRGYWGNKI K HTVPC
Sbjct: 142 LAKLSVVPIRRGYWGNKIGKPHTVPC 167
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/40 (67%), Positives = 36/40 (90%)
Frame = +3
Query: 129 DQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++++WVPVTKLGRLV+EGKI K+ IYL SLP+KE++IID
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIID 80
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SVT R++PAPRG+GI
Sbjct: 166 PCKVTGKCGSVTVRMVPAPRGSGI 189
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 161 bits (391), Expect = 3e-40
Identities = 73/86 (84%), Positives = 79/86 (91%)
Frame = +2
Query: 251 LLGPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAII 430
L+GP+L D V+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G GVKCSKEVATAIRGAII
Sbjct: 91 LIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAII 150
Query: 431 LAKLSVLPVRRGYWGNKIXKLHTVPC 508
LAKLSV+PVRRGYWGNKI K HTVPC
Sbjct: 151 LAKLSVVPVRRGYWGNKIGKPHTVPC 176
Score = 58.0 bits (134), Expect = 4e-09
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = +3
Query: 129 DQKEWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEFEIID 248
++++WVPVTKLGRLV G I ++ IYL SLP+KE++IID
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIID 89
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 502 PLXVTGNCXSVTFRLIPAPRGTGI 573
P VTG C SVT R++PAPRG+GI
Sbjct: 175 PCKVTGKCGSVTVRMVPAPRGSGI 198
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +2
Query: 272 DXVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGXGVKCSKEVATAIRGAIILAKLSVL 451
+ V+++ V K + G++ +F+A V +GD G++G G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 452 PV 457
V
Sbjct: 209 QV 210
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -1
Query: 501 TVCSFXILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 322
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 321 CPARVCF 301
A CF
Sbjct: 218 AKASTCF 224
>At1g12640.1 68414.m01468 membrane bound O-acyl transferase (MBOAT)
family protein low similarity to porcupine from [Xenopus
laevis] GI:6714514, GI:6714520, GI:6714518, GI:6714516;
contains Pfam profile PF03062: MBOAT family
Length = 462
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 564 TTRXRNQPECYGXTVAGDXQGTVCS--FXILLPQ*PL 460
TT R +P YG T+ Q +C + L+PQ PL
Sbjct: 195 TTEKRKKPSPYGATIRAILQAAICMALYLYLVPQYPL 231
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 480 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 301
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 300 CTGMILRTSSFR 265
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 338 AFVAIGDNNGHIGXGVKCSKE 400
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,478
Number of Sequences: 28952
Number of extensions: 196129
Number of successful extensions: 450
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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